Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES07423 | Sorghum | nucleus | 81.69 | 85.67 |
| Zm00001d051509_P001 | Maize | nucleus | 71.31 | 78.61 |
| TraesCS6A01G264200.1 | Wheat | nucleus | 59.84 | 65.18 |
| TraesCS6B01G291200.1 | Wheat | nucleus | 57.92 | 63.1 |
| TraesCS6D01G250700.1 | Wheat | nucleus | 58.47 | 61.67 |
| HORVU6Hr1G067000.2 | Barley | nucleus | 58.47 | 61.67 |
| GSMUA_Achr11P... | Banana | mitochondrion | 31.15 | 60.32 |
| Os02t0691500-01 | Rice | nucleus | 59.84 | 58.71 |
| Zm00001d002492_P001 | Maize | mitochondrion | 23.5 | 48.86 |
| Zm00001d026046_P001 | Maize | nucleus | 44.54 | 48.51 |
| GSMUA_Achr11P... | Banana | nucleus | 37.98 | 46.33 |
| Zm00001d031260_P001 | Maize | nucleus | 26.5 | 44.91 |
| KRH45428 | Soybean | nucleus | 36.34 | 43.89 |
| VIT_02s0012g01450.t01 | Wine grape | nucleus | 37.7 | 43.81 |
| KRH75598 | Soybean | nucleus | 36.07 | 43.56 |
| Zm00001d020790_P001 | Maize | nucleus | 37.98 | 41.87 |
| Solyc08g076820.2.1 | Tomato | nucleus | 37.43 | 41.77 |
| PGSC0003DMT400045210 | Potato | nucleus | 37.43 | 41.52 |
| Zm00001d005939_P001 | Maize | nucleus | 36.89 | 40.54 |
| CDY03201 | Canola | cytosol | 19.13 | 38.67 |
| Zm00001d052192_P001 | Maize | nucleus | 34.7 | 36.81 |
| Zm00001d027987_P001 | Maize | nucleus | 33.06 | 36.56 |
| Bra025007.1-P | Field mustard | nucleus | 26.78 | 35.77 |
| CDY63053 | Canola | nucleus | 31.42 | 35.49 |
| CDX77682 | Canola | nucleus | 31.42 | 35.49 |
| Zm00001d018119_P001 | Maize | nucleus | 33.61 | 34.94 |
| AT5G46690.1 | Thale cress | nucleus | 31.15 | 34.86 |
| Zm00001d009778_P001 | Maize | nucleus | 20.77 | 34.7 |
| Zm00001d048229_P001 | Maize | nucleus | 33.61 | 34.45 |
| Bra017533.1-P | Field mustard | nucleus | 26.78 | 33.91 |
| CDY35175 | Canola | nucleus | 26.78 | 33.33 |
| Zm00001d027419_P001 | Maize | nucleus | 27.6 | 32.48 |
| Zm00001d048478_P001 | Maize | nucleus | 27.32 | 30.86 |
| Zm00001d009715_P001 | Maize | nucleus | 26.78 | 23.45 |
| Zm00001d046096_P001 | Maize | nucleus | 16.94 | 17.92 |
| Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 18.31 | 17.87 |
| Zm00001d016095_P001 | Maize | nucleus | 18.85 | 17.56 |
Protein Annotations
| EntrezGene:100272406 | MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A1D6HGI9 | ProteinID:AQK73722.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11969 | PANTHER:PTHR11969:SF31 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0008450707 | EnsemblPlantsGene:Zm00001d017677 | EnsemblPlants:Zm00001d017677_P001 | EnsemblPlants:Zm00001d017677_T001 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
bHLH-transcription factor 53Transcription factor bHLH71
Coordinates
chr5:+:204020338..204023940
Molecular Weight (calculated)
39108.3 Da
IEP (calculated)
6.662
GRAVY (calculated)
-0.060
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MSALVDALCA PPSDTALVYD TFNAANFLFD AAAFCDGAGI VAAPASAHQA PVEAQAATTS AAPTTTARAR KRRRRPRSCK SREETETQRM THIAVERNRR
101: RQMNEYLAAL RSIMPEAYVQ RGDQASIVGG AIEFVKELEQ QVQCLEAQKR KLLVHQRVAA AKPADATPMR ASSSGARACC ADSAAAAATT SNCSSGLTTE
201: DAAADHALPP PPFAQFFTYP QYVWCHSAAR DPAEEEDGRR SGVADVEVTL VETHASVRVM TARRPGQLLS LVTGLQALRL AVLHLSVVTA LDALVLYTTS
301: VKVHNCTKKV SFDSFLRFFF VVDGVEEGCG LATADDIAAA VHHVLCIIDA EATEQQLLAA AGPQPQ
101: RQMNEYLAAL RSIMPEAYVQ RGDQASIVGG AIEFVKELEQ QVQCLEAQKR KLLVHQRVAA AKPADATPMR ASSSGARACC ADSAAAAATT SNCSSGLTTE
201: DAAADHALPP PPFAQFFTYP QYVWCHSAAR DPAEEEDGRR SGVADVEVTL VETHASVRVM TARRPGQLLS LVTGLQALRL AVLHLSVVTA LDALVLYTTS
301: VKVHNCTKKV SFDSFLRFFF VVDGVEEGCG LATADDIAAA VHHVLCIIDA EATEQQLLAA AGPQPQ
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.