Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES06610 | Sorghum | nucleus | 76.08 | 75.13 |
| Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 70.99 | 74.4 |
| Os02t0257500-00 | Rice | nucleus | 59.29 | 56.14 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 38.93 | 54.06 |
| GSMUA_Achr10P... | Banana | nucleus | 34.1 | 51.34 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 39.44 | 49.84 |
| Solyc03g007410.2.1 | Tomato | nucleus | 41.98 | 49.4 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 41.48 | 48.22 |
| Zm00001d046096_P001 | Maize | nucleus | 41.73 | 47.4 |
| PGSC0003DMT400023497 | Potato | nucleus | 42.49 | 47.04 |
| KRH64504 | Soybean | nucleus | 40.46 | 46.22 |
| CDY47059 | Canola | nucleus | 40.97 | 46.13 |
| KRH53438 | Soybean | nucleus | 40.97 | 46.13 |
| CDY19692 | Canola | nucleus | 41.22 | 45.89 |
| CDY38734 | Canola | nucleus | 41.22 | 45.89 |
| AT5G53210.1 | Thale cress | nucleus | 42.49 | 45.88 |
| CDY14397 | Canola | nucleus | 41.22 | 45.63 |
| KRH16521 | Soybean | nucleus | 38.17 | 45.32 |
| KRH18131 | Soybean | nucleus | 38.68 | 45.24 |
| Zm00001d009778_P001 | Maize | nucleus | 24.94 | 44.75 |
| Bra029088.1-P | Field mustard | nucleus | 36.9 | 43.15 |
| Bra022638.1-P | Field mustard | nucleus | 37.91 | 42.57 |
| CDX96201 | Canola | nucleus | 37.91 | 42.33 |
| Bra003073.1-P | Field mustard | nucleus | 38.42 | 34.87 |
| Zm00001d031260_P001 | Maize | nucleus | 16.54 | 30.09 |
| Zm00001d027987_P001 | Maize | nucleus | 20.61 | 24.47 |
| Zm00001d002492_P001 | Maize | mitochondrion | 10.94 | 24.43 |
| Zm00001d026046_P001 | Maize | nucleus | 20.61 | 24.11 |
| Zm00001d052192_P001 | Maize | nucleus | 20.1 | 22.9 |
| Zm00001d020790_P001 | Maize | nucleus | 19.34 | 22.89 |
| Zm00001d018119_P001 | Maize | nucleus | 20.1 | 22.44 |
| Zm00001d048229_P001 | Maize | nucleus | 20.1 | 22.13 |
| Zm00001d005939_P001 | Maize | nucleus | 18.07 | 21.32 |
| Zm00001d027419_P001 | Maize | nucleus | 16.54 | 20.9 |
| Zm00001d051509_P001 | Maize | nucleus | 17.3 | 20.48 |
| Zm00001d048478_P001 | Maize | nucleus | 16.79 | 20.37 |
| Zm00001d009715_P001 | Maize | nucleus | 21.37 | 20.1 |
| Zm00001d017677_P001 | Maize | nucleus | 17.56 | 18.85 |
Protein Annotations
| EntrezGene:100381548 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:AQK70052.1 | EMBL:BT061585 | UniProt:C0HGX9 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | EMBL:KJ726867 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF58 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00019485C6 | EnsemblPlantsGene:Zm00001d016095 | EnsemblPlants:Zm00001d016095_P001 |
| EnsemblPlants:Zm00001d016095_T001 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
bHLH-transcription factor 139Transcription factor SPEECHLESS
Coordinates
chr5:+:144342410..144347442
Molecular Weight (calculated)
41428.3 Da
IEP (calculated)
7.822
GRAVY (calculated)
-0.230
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDGQCELVV DNHCQLRHRL DLSGAEDLFS VIGTWEERTD DGGAGDGGGG GSSAPAMRAY RQISCSAGAV AATRLTGKSR RRTGEEEEEK GSGGSAPGPA
101: HKKHNKAGSA VTDDDEGAPK ISHVAVERNR RKQMNEHLTV LRSLMPCFYV KRGDQASIIG GVVDYIKELQ QVLRSLEAKK HRKAYAEQVL SPRPSAGGVS
201: TSVSAASPRH LAVKSVAPLS PRMAVPISPR TPTPGSPYKA AASGVAGCCR LPLLPPYMLS SSAAAAAASY SHDQQQHYST QTTTYLPTLD SLVTELATQQ
301: AACRPAAAAA GLALPDVKVE FAGPNLVLKT VSHRAPGQAL KIIAALESLS LQILHVSVSA VDDTMLHSFT IKIGIECELS AEELVQEIQQ TLL
101: HKKHNKAGSA VTDDDEGAPK ISHVAVERNR RKQMNEHLTV LRSLMPCFYV KRGDQASIIG GVVDYIKELQ QVLRSLEAKK HRKAYAEQVL SPRPSAGGVS
201: TSVSAASPRH LAVKSVAPLS PRMAVPISPR TPTPGSPYKA AASGVAGCCR LPLLPPYMLS SSAAAAAASY SHDQQQHYST QTTTYLPTLD SLVTELATQQ
301: AACRPAAAAA GLALPDVKVE FAGPNLVLKT VSHRAPGQAL KIIAALESLS LQILHVSVSA VDDTMLHSFT IKIGIECELS AEELVQEIQQ TLL
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.