Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 65.59 | 78.16 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 70.74 | 77.74 |
| GSMUA_Achr7P21110_001 | Banana | nucleus | 35.69 | 57.81 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 62.7 | 57.69 |
| KRH64504 | Soybean | nucleus | 62.06 | 56.1 |
| GSMUA_Achr7P21190_001 | Banana | nucleus | 35.69 | 56.06 |
| KRH53438 | Soybean | nucleus | 62.7 | 55.87 |
| KRH18131 | Soybean | nucleus | 59.16 | 54.76 |
| KRH16521 | Soybean | nucleus | 56.91 | 53.47 |
| Solyc03g007410.2.1 | Tomato | nucleus | 55.31 | 51.5 |
| CDY47059 | Canola | nucleus | 56.27 | 50.14 |
| PGSC0003DMT400023497 | Potato | nucleus | 56.91 | 49.86 |
| CDY38734 | Canola | nucleus | 55.63 | 49.01 |
| AT5G53210.1 | Thale cress | nucleus | 56.91 | 48.63 |
| CDY14397 | Canola | nucleus | 55.31 | 48.45 |
| CDY19692 | Canola | nucleus | 54.98 | 48.44 |
| Bra029088.1-P | Field mustard | nucleus | 50.48 | 46.73 |
| CDX96201 | Canola | nucleus | 50.8 | 44.89 |
| Bra022638.1-P | Field mustard | nucleus | 50.48 | 44.86 |
| TraesCS7B01G232000.1 | Wheat | cytosol | 52.09 | 44.51 |
| TraesCS7A01G350900.1 | Wheat | nucleus | 52.09 | 44.51 |
| HORVU7Hr1G079250.1 | Barley | cytosol | 51.45 | 43.84 |
| TraesCS7D01G327900.1 | Wheat | nucleus | 50.48 | 43.13 |
| Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 50.48 | 41.87 |
| GSMUA_Achr8P28400_001 | Banana | nucleus | 26.37 | 41.21 |
| EES06610 | Sorghum | nucleus | 51.13 | 39.95 |
| EER88428 | Sorghum | nucleus | 48.55 | 39.74 |
| Zm00001d016095_P001 | Maize | nucleus | 49.84 | 39.44 |
| Zm00001d046096_P001 | Maize | nucleus | 43.09 | 38.73 |
| GSMUA_Achr3P06660_001 | Banana | mitochondrion, nucleus | 23.15 | 38.71 |
| Os02t0257500-00 | Rice | nucleus | 51.13 | 38.31 |
| GSMUA_Achr11P... | Banana | mitochondrion | 23.15 | 38.1 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 47.91 | 37.72 |
| Bra003073.1-P | Field mustard | nucleus | 51.13 | 36.72 |
| GSMUA_Achr9P15000_001 | Banana | mitochondrion | 22.51 | 35.18 |
| GSMUA_Achr10P... | Banana | mitochondrion | 21.54 | 33.84 |
| GSMUA_Achr2P22310_001 | Banana | nucleus | 24.44 | 31.41 |
| GSMUA_Achr5P17900_001 | Banana | nucleus | 27.97 | 30.85 |
| GSMUA_Achr2P06030_001 | Banana | nucleus | 30.87 | 30.09 |
| GSMUA_Achr10P... | Banana | nucleus | 28.3 | 28.48 |
| GSMUA_Achr7P12790_001 | Banana | nucleus | 28.62 | 27.22 |
| GSMUA_Achr8P17650_001 | Banana | nucleus | 25.72 | 27.03 |
| GSMUA_Achr5P05450_001 | Banana | nucleus | 24.76 | 26.83 |
| GSMUA_Achr11P... | Banana | nucleus | 25.72 | 26.67 |
| GSMUA_Achr6P10290_001 | Banana | nucleus | 24.44 | 26.12 |
| GSMUA_Achr5P20300_001 | Banana | nucleus | 24.44 | 26.03 |
| GSMUA_Achr11P... | Banana | nucleus | 23.79 | 25.96 |
| GSMUA_Achr6P02150_001 | Banana | nucleus | 27.97 | 25.22 |
| GSMUA_Achr11P... | Banana | nucleus | 23.79 | 22.42 |
| GSMUA_Achr8P12330_001 | Banana | golgi, vacuole | 24.76 | 21.04 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P19870_001 | EnsemblPlants:GSMUA_Achr8T19870_001 | EnsemblPlantsGene:GSMUA_Achr8G19870_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF58 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000294EF6F | UniProt:M0TRZ0 | MapMan:15.5.32 | : | : |
Description
Putative Transcription factor SPEECHLESS [Source:GMGC_GENE;Acc:GSMUA_Achr8G19870_001]
Coordinates
chr8:+:24990853..24992331
Molecular Weight (calculated)
33973.2 Da
IEP (calculated)
4.872
GRAVY (calculated)
-0.305
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEGLSELFE HPEFTRTDLA VDTSPEDLFS ILETFEDAIT KEVPLFDPFQ GSNFSPRVGE QPNTGLVSQG WSAGPSETDD ALEEAGQALK KRKLSDSPVS
101: PTEAGIHDGQ QKTSHIAVER NRRKQMNEHL SVLRSLMPCF YAKRGDQASI IGGVVDYIKE LQQVLQSLEA KKQRKVYSEV LSPRPLTPQP GSPYMPKMQQ
201: NYVSPTLASS HESSSPFFSS ISELAANSKS PVADVEVKFS GPNVILKTAS HRIPGQVLKI IAALEGLALE ILHVSISTTD DTMLNSFTIK IGIECVLSAE
301: ELAQAIQQTF S
101: PTEAGIHDGQ QKTSHIAVER NRRKQMNEHL SVLRSLMPCF YAKRGDQASI IGGVVDYIKE LQQVLQSLEA KKQRKVYSEV LSPRPLTPQP GSPYMPKMQQ
201: NYVSPTLASS HESSSPFFSS ISELAANSKS PVADVEVKFS GPNVILKTAS HRIPGQVLKI IAALEGLALE ILHVSISTTD DTMLNSFTIK IGIECVLSAE
301: ELAQAIQQTF S
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.