Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96201 | Canola | nucleus | 98.0 | 97.44 |
| Bra029088.1-P | Field mustard | nucleus | 83.71 | 87.2 |
| AT5G53210.1 | Thale cress | nucleus | 90.57 | 87.09 |
| Bra003073.1-P | Field mustard | nucleus | 86.0 | 69.52 |
| KRH64504 | Soybean | nucleus | 56.29 | 57.27 |
| KRH53438 | Soybean | nucleus | 56.57 | 56.73 |
| GSMUA_Achr10P... | Banana | nucleus | 42.0 | 56.32 |
| KRH18131 | Soybean | nucleus | 54.0 | 56.25 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 54.29 | 56.21 |
| KRH16521 | Soybean | nucleus | 51.71 | 54.68 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 42.86 | 53.0 |
| Solyc03g007410.2.1 | Tomato | nucleus | 48.57 | 50.9 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 44.86 | 50.48 |
| PGSC0003DMT400023497 | Potato | nucleus | 50.29 | 49.58 |
| TraesCS7B01G232000.1 | Wheat | cytosol | 44.86 | 43.13 |
| TraesCS7A01G350900.1 | Wheat | nucleus | 44.86 | 43.13 |
| HORVU7Hr1G079250.1 | Barley | cytosol | 44.86 | 43.01 |
| TraesCS7D01G327900.1 | Wheat | nucleus | 44.57 | 42.86 |
| Zm00001d046096_P001 | Maize | nucleus | 42.0 | 42.49 |
| Bra020775.1-P | Field mustard | nucleus | 24.29 | 42.29 |
| Bra040234.1-P | Field mustard | nucleus | 24.29 | 42.29 |
| Bra001183.1-P | Field mustard | nucleus | 24.86 | 42.03 |
| EER88428 | Sorghum | nucleus | 43.43 | 40.0 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 44.0 | 38.99 |
| Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 41.43 | 38.67 |
| EES06610 | Sorghum | nucleus | 43.71 | 38.44 |
| Zm00001d016095_P001 | Maize | nucleus | 42.57 | 37.91 |
| Os02t0257500-00 | Rice | nucleus | 41.43 | 34.94 |
| Bra040856.1-P | Field mustard | nucleus | 18.86 | 30.41 |
| Bra028351.1-P | Field mustard | nucleus | 26.29 | 25.56 |
| Bra025007.1-P | Field mustard | nucleus | 20.0 | 25.55 |
| Bra028357.1-P | Field mustard | nucleus | 28.57 | 25.0 |
| Bra001929.1-P | Field mustard | nucleus | 28.86 | 24.94 |
| Bra004505.1-P | Field mustard | nucleus | 18.86 | 24.35 |
| Bra031865.1-P | Field mustard | nucleus | 15.14 | 24.31 |
| Bra016377.1-P | Field mustard | nucleus | 20.86 | 24.17 |
| Bra037414.1-P | Field mustard | nucleus | 21.14 | 23.79 |
| Bra007644.1-P | Field mustard | nucleus | 18.86 | 23.66 |
| Bra017533.1-P | Field mustard | nucleus | 19.14 | 23.18 |
| Bra012329.1-P | Field mustard | nucleus | 19.71 | 22.77 |
| Bra003886.1-P | Field mustard | nucleus | 20.0 | 21.6 |
| Bra016080.1-P | Field mustard | nucleus | 20.0 | 21.54 |
| Bra008017.1-P | Field mustard | nucleus | 20.0 | 21.47 |
| Bra027958.1-P | Field mustard | nucleus | 17.71 | 21.23 |
| Bra040483.1-P | Field mustard | nucleus | 18.29 | 20.13 |
Protein Annotations
| EnsemblPlants:Bra022638.1 | EnsemblPlants:Bra022638.1-P | EnsemblPlantsGene:Bra022638 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF58 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002546C0F | UniProt:M4E1I8 | MapMan:15.5.32 | : |
Description
AT5G53210 (E=3e-096) SPCH | SPCH (SPEECHLESS); DNA binding / transcription factor
Coordinates
chrA02:+:8358887..8365434
Molecular Weight (calculated)
38564.6 Da
IEP (calculated)
5.308
GRAVY (calculated)
-0.554
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MQEIISDFLE ECEFVDTSLA GDDLFAILES LEGAGEISST PASTPRDGIA SSNELVKDQI HETSSPKRNK RKRLETDKEE DEEEDGEGEG EGEEDNKQDG
101: EQKMSHVTVE RNRRKQMNEH LTVLRSLMPC FYVKRGDQAS IIGGVVEYIS ELQQVRQSLE AKKQRKTYAE VLSPRLVSSP RPSPPVLSPR KPPLSPRINH
201: LQIHHHLLPP ISPRTPQPTS PYRAHPPQLP LIPQPPLRSY SSLASCSTLG DPPPYSPASS SSSPSVSSNH ESSMINELVA NSKSALADVE VKFSGANVLL
301: KTVSHKIPGQ VMKIIAALED LALEILQVNI NSVDETMLNS FTIKLVAKTE
101: EQKMSHVTVE RNRRKQMNEH LTVLRSLMPC FYVKRGDQAS IIGGVVEYIS ELQQVRQSLE AKKQRKTYAE VLSPRLVSSP RPSPPVLSPR KPPLSPRINH
201: LQIHHHLLPP ISPRTPQPTS PYRAHPPQLP LIPQPPLRSY SSLASCSTLG DPPPYSPASS SSSPSVSSNH ESSMINELVA NSKSALADVE VKFSGANVLL
301: KTVSHKIPGQ VMKIIAALED LALEILQVNI NSVDETMLNS FTIKLVAKTE
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.