Factsheet for Bra003886.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68274	Canola	nucleus	99.69	99.69
AT1G72210.1	Thale cress	nucleus	80.25	81.25
Bra016080.1-P	Field mustard	nucleus	80.86	80.62
Bra008017.1-P	Field mustard	nucleus	79.01	78.53
Bra040856.1-P	Field mustard	nucleus	48.46	72.35
Bra016377.1-P	Field mustard	nucleus	60.19	64.57
Bra012329.1-P	Field mustard	nucleus	58.64	62.71
VIT_18s0001g06650.t01	Wine grape	nucleus	52.16	54.52
Solyc12g087850.1.1	Tomato	nucleus	25.62	51.23
KRH62289	Soybean	nucleus	50.62	50.62
KRH16792	Soybean	nucleus	49.38	49.38
KRH53000	Soybean	nucleus	49.69	48.2
KRH72411	Soybean	nucleus	49.38	46.24
PGSC0003DMT400005446	Potato	nucleus	49.07	46.09
Solyc04g074810.2.1	Tomato	extracellular	48.77	44.51
PGSC0003DMT400045820	Potato	nucleus	40.12	43.92
Bra027958.1-P	Field mustard	nucleus	36.11	40.07
Bra031865.1-P	Field mustard	nucleus	25.0	37.16
Bra025007.1-P	Field mustard	nucleus	30.86	36.5
Bra004505.1-P	Field mustard	nucleus	29.32	35.06
Bra007644.1-P	Field mustard	nucleus	29.94	34.77
Bra017533.1-P	Field mustard	nucleus	29.94	33.56
Bra037414.1-P	Field mustard	nucleus	30.86	32.15
Bra040483.1-P	Field mustard	nucleus	28.7	29.25
Bra020775.1-P	Field mustard	nucleus	17.59	28.36
Bra001183.1-P	Field mustard	nucleus	17.28	27.05
Bra040234.1-P	Field mustard	nucleus	16.36	26.37
Bra028357.1-P	Field mustard	nucleus	29.94	24.25
Bra001929.1-P	Field mustard	nucleus	29.94	23.95
Bra028351.1-P	Field mustard	nucleus	25.62	23.06
Bra029088.1-P	Field mustard	nucleus	22.53	21.73
Bra022638.1-P	Field mustard	nucleus	21.6	20.0
Bra003073.1-P	Field mustard	nucleus	23.15	17.32

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra003886	EnsemblPlants:Bra003886.1	EnsemblPlants:Bra003886.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
UniProt:M4CI53	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR11969	PANTHER:PTHR11969:SF26	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000254180D	InterPro:bHLH_dom	SEG:seg	:	:

Description

AT1G72210 (E=3e-123) | basic helix-loop-helix (bHLH) family protein (bHLH096)

Coordinates

chrA07:-:15553139..15555309

Molecular Weight (calculated)

36635.7 Da

IEP (calculated)

5.695

GRAVY (calculated)

-0.768

Length

324 amino acids

Sequence
(BLAST)

001: MALEAVVYPQ DPFSYISYKD YQFHDLYFQQ EEDRDPLETK NNVKLGQEQR QGFESIYYNG NSGDNNDDYN YNDHKDLQRP RDDLPYGSIV DTENQPPTSV
101: LATGEGRRKR RRTKSSKNKE EIENQRMTHI AVERNRRKQM NEYLAVLRSL MPPSYAQRGD QASVVGGAIN YLKELEHHLQ SMDPTVSTPA TKQAGDGAGD
201: QMNTIAASSS GPFSDFFAFP QYSRRPSSSS VAEGTAEIEV TMVESHANVK ILAKKRPKQL LKLVASIQSL RLTVLHLNVT TRDDSVLYSI SLKVEEGSQL
301: NTVEDIAVAV NQILRRIEED SSFS

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.