Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH16792 | Soybean | nucleus | 89.02 | 95.06 |
| KRH62289 | Soybean | nucleus | 68.79 | 73.46 |
| KRH53000 | Soybean | nucleus | 69.36 | 71.86 |
| Bra040856.1-P | Field mustard | nucleus | 38.73 | 61.75 |
| VIT_18s0001g06650.t01 | Wine grape | nucleus | 53.47 | 59.68 |
| CDY37634 | Canola | nucleus | 38.44 | 58.33 |
| Solyc12g087850.1.1 | Tomato | nucleus | 25.43 | 54.32 |
| CDY21365 | Canola | nucleus | 46.24 | 53.16 |
| CDY41479 | Canola | nucleus | 43.93 | 53.15 |
| AT1G72210.1 | Thale cress | nucleus | 48.55 | 52.5 |
| CDY04811 | Canola | nucleus | 45.66 | 52.49 |
| CDX91680 | Canola | nucleus | 42.77 | 51.75 |
| Bra012329.1-P | Field mustard | nucleus | 44.8 | 51.16 |
| Bra016377.1-P | Field mustard | nucleus | 44.22 | 50.66 |
| CDY12528 | Canola | nucleus | 41.04 | 50.35 |
| KRG96858 | Soybean | nucleus | 47.98 | 50.0 |
| CDX68274 | Canola | nucleus | 46.53 | 49.69 |
| CDY50447 | Canola | nucleus | 46.53 | 49.69 |
| CDY46652 | Canola | nucleus | 40.46 | 49.65 |
| Bra003886.1-P | Field mustard | nucleus | 46.24 | 49.38 |
| KRG92821 | Soybean | nucleus | 46.53 | 49.09 |
| PGSC0003DMT400005446 | Potato | nucleus | 48.27 | 48.41 |
| PGSC0003DMT400045820 | Potato | nucleus | 41.33 | 48.31 |
| CDX96382 | Canola | nucleus | 45.38 | 48.31 |
| Bra016080.1-P | Field mustard | nucleus | 45.38 | 48.31 |
| KRH68589 | Soybean | nucleus | 47.69 | 48.1 |
| Bra008017.1-P | Field mustard | nucleus | 45.09 | 47.85 |
| CDX72877 | Canola | nucleus | 45.09 | 47.56 |
| CDX82171 | Canola | nucleus | 44.8 | 47.55 |
| CDY03650 | Canola | nucleus | 44.8 | 47.55 |
| KRH33976 | Soybean | nucleus | 45.38 | 47.29 |
| Solyc04g074810.2.1 | Tomato | extracellular | 47.98 | 46.76 |
| KRH75598 | Soybean | nucleus | 37.86 | 43.23 |
| KRH45428 | Soybean | nucleus | 37.57 | 42.9 |
| AT1G22490.2 | Thale cress | nucleus | 39.6 | 42.02 |
| KRH20902 | Soybean | cytosol | 22.54 | 40.84 |
| KRH11385 | Soybean | cytosol | 22.54 | 40.84 |
| KRH47774 | Soybean | nucleus | 36.71 | 33.07 |
| KRH06347 | Soybean | nucleus | 36.71 | 31.91 |
| KRH16521 | Soybean | nucleus | 26.59 | 27.79 |
| KRH18131 | Soybean | nucleus | 26.3 | 27.08 |
| KRH64504 | Soybean | nucleus | 26.88 | 27.03 |
| KRH53438 | Soybean | nucleus | 27.17 | 26.93 |
| KRH75571 | Soybean | nucleus | 32.08 | 25.87 |
| KRH71094 | Soybean | nucleus | 31.21 | 24.22 |
Protein Annotations
| EntrezGene:100803240 | MapMan:15.5.32 | Gene3D:4.10.280.10 | EMBL:ACUP02001209 | ncoils:Coil | EnsemblPlantsGene:GLYMA_02G210500 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | UniProt:K7K9V8 | EnsemblPlants:KRH72411 | ProteinID:KRH72411 | ProteinID:KRH72411.1 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR11969 | PANTHER:PTHR11969:SF26 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002337658 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:39558785..39562318
Molecular Weight (calculated)
37865.7 Da
IEP (calculated)
7.251
GRAVY (calculated)
-0.439
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEAVVFPQ DPFTYGCNNK DFLYSLVGGD GGGGGGSHEY GFQASSEDKP HVGIIINNNN IDHTLHANWD SSSPSVLQSV KEQWDSHSSP EACTVDQSLP
101: RAFPLPPSSS SPEAAATGRR KRRRTKSAKN KEEIENQRMT HIAVERNRRK QMNEYLAVLR SLMPPSYVQR GDQASIIGGT INFVKELEQL LQCMKGQKKR
201: TKEGSGFSDS SPFSEFFMFP QYSTRATQSS SSSSSKGYPG TCEANNNMAR NPSSWAVADI EVTLVDGHAN MKILCKKRPG MLLKMVVGLL SLGLSILHLN
301: VTTVDDMVLT SVSVKVEEGC QLNTVDEIAA AVHQLSRTVQ EEAVFS
101: RAFPLPPSSS SPEAAATGRR KRRRTKSAKN KEEIENQRMT HIAVERNRRK QMNEYLAVLR SLMPPSYVQR GDQASIIGGT INFVKELEQL LQCMKGQKKR
201: TKEGSGFSDS SPFSEFFMFP QYSTRATQSS SSSSSKGYPG TCEANNNMAR NPSSWAVADI EVTLVDGHAN MKILCKKRPG MLLKMVVGLL SLGLSILHLN
301: VTTVDDMVLT SVSVKVEEGC QLNTVDEIAA AVHQLSRTVQ EEAVFS
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.