Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400005446 | Potato | nucleus | 90.42 | 93.04 |
| Solyc12g087850.1.1 | Tomato | nucleus | 29.01 | 63.58 |
| Bra040856.1-P | Field mustard | nucleus | 37.46 | 61.29 |
| CDY37634 | Canola | nucleus | 38.87 | 60.53 |
| VIT_18s0001g06650.t01 | Wine grape | nucleus | 48.73 | 55.81 |
| Solyc11g010340.1.1 | Tomato | nucleus | 44.23 | 52.68 |
| KRH16792 | Soybean | nucleus | 47.61 | 52.16 |
| CDY41479 | Canola | nucleus | 41.97 | 52.1 |
| KRH62289 | Soybean | nucleus | 47.32 | 51.85 |
| CDX91680 | Canola | nucleus | 41.41 | 51.4 |
| KRH53000 | Soybean | nucleus | 47.89 | 50.9 |
| AT1G72210.1 | Thale cress | nucleus | 45.07 | 50.0 |
| CDY21365 | Canola | nucleus | 42.25 | 49.83 |
| Bra016377.1-P | Field mustard | nucleus | 42.25 | 49.67 |
| CDY04811 | Canola | nucleus | 41.97 | 49.5 |
| Bra016080.1-P | Field mustard | nucleus | 45.07 | 49.23 |
| CDY50447 | Canola | nucleus | 44.51 | 48.77 |
| Bra003886.1-P | Field mustard | nucleus | 44.51 | 48.77 |
| CDX68274 | Canola | nucleus | 44.51 | 48.77 |
| CDX96382 | Canola | nucleus | 44.51 | 48.62 |
| CDX72877 | Canola | nucleus | 44.51 | 48.17 |
| KRH72411 | Soybean | nucleus | 46.76 | 47.98 |
| Bra012329.1-P | Field mustard | nucleus | 40.56 | 47.52 |
| Bra008017.1-P | Field mustard | nucleus | 43.1 | 46.93 |
| CDY03650 | Canola | nucleus | 42.82 | 46.63 |
| CDY12528 | Canola | nucleus | 36.9 | 46.45 |
| CDX82171 | Canola | nucleus | 42.54 | 46.32 |
| CDY46652 | Canola | nucleus | 36.34 | 45.74 |
| Solyc08g076820.2.1 | Tomato | nucleus | 40.56 | 43.9 |
| Solyc01g098720.2.1 | Tomato | nucleus | 38.31 | 41.46 |
| AT1G22490.2 | Thale cress | nucleus | 37.75 | 41.1 |
| Solyc01g080050.2.1 | Tomato | nucleus | 22.25 | 40.51 |
| Solyc09g091760.1.1 | Tomato | nucleus | 28.17 | 40.49 |
| Solyc05g053660.1.1 | Tomato | nucleus | 30.99 | 28.72 |
| Solyc03g007410.2.1 | Tomato | nucleus | 24.23 | 25.75 |
Protein Annotations
| EnsemblPlants:Solyc04g074810.2.1 | EnsemblPlantsGene:Solyc04g074810.2 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR11969 |
| PANTHER:PTHR11969:SF26 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000276585D | UniProt:K4BU19 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr4:-:60723061..60726653
Molecular Weight (calculated)
39740.6 Da
IEP (calculated)
6.703
GRAVY (calculated)
-0.601
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MFTRSRSILM ALETVIYNQE TFGYGCKEYY NNNLGNFSYN YELGLTQGEG EMSFTNLLDH NNNNNREESS SSPTELMYNN NAREYNIWDP NSSLEDHHLF
101: MEGSPAAELP AAAVRSAATS GRRKRRRTRS CKNKEELENQ RMTHIAVERN RRKQMNEYLA VIRSLMPPSY VQRGDQASII GGAINFVKEL EHHLQTLEAQ
201: KRSHPQKQEH SDNHGSSSTP PFADYFAFPQ YSTHSKSTSP TAAASDVAAA GSCNSPLATE KMSALADIEV SMAESHANLK ILSKRRPKQL LKIVAGLQCL
301: WLTVLHLNVT TVDHMVLYSL SLKLEEGCQL TTADEIADSV NQLLGRIQEE AASSS
101: MEGSPAAELP AAAVRSAATS GRRKRRRTRS CKNKEELENQ RMTHIAVERN RRKQMNEYLA VIRSLMPPSY VQRGDQASII GGAINFVKEL EHHLQTLEAQ
201: KRSHPQKQEH SDNHGSSSTP PFADYFAFPQ YSTHSKSTSP TAAASDVAAA GSCNSPLATE KMSALADIEV SMAESHANLK ILSKRRPKQL LKIVAGLQCL
301: WLTVLHLNVT TVDHMVLYSL SLKLEEGCQL TTADEIADSV NQLLGRIQEE AASSS
001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
Arabidopsis Description
BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.