Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040856.1-P | Field mustard | nucleus | 45.16 | 64.52 |
| CDY37634 | Canola | nucleus | 45.48 | 61.84 |
| KRH62289 | Soybean | nucleus | 60.0 | 57.41 |
| KRH16792 | Soybean | nucleus | 59.35 | 56.79 |
| CDY41479 | Canola | nucleus | 51.61 | 55.94 |
| Solyc12g087850.1.1 | Tomato | nucleus | 29.03 | 55.56 |
| KRH53000 | Soybean | nucleus | 59.35 | 55.09 |
| VIT_07s0191g00240.t01 | Wine grape | nucleus | 56.77 | 54.66 |
| CDX91680 | Canola | nucleus | 50.32 | 54.55 |
| AT1G72210.1 | Thale cress | nucleus | 55.81 | 54.06 |
| Bra016377.1-P | Field mustard | nucleus | 52.26 | 53.64 |
| KRH72411 | Soybean | nucleus | 59.68 | 53.47 |
| CDY21365 | Canola | nucleus | 51.29 | 52.82 |
| CDY04811 | Canola | nucleus | 50.97 | 52.49 |
| CDX68274 | Canola | nucleus | 54.84 | 52.47 |
| Bra003886.1-P | Field mustard | nucleus | 54.52 | 52.16 |
| CDY50447 | Canola | nucleus | 54.52 | 52.16 |
| VIT_14s0128g00110.t01 | Wine grape | nucleus | 53.87 | 51.7 |
| Bra012329.1-P | Field mustard | nucleus | 50.32 | 51.49 |
| CDY03650 | Canola | nucleus | 53.87 | 51.23 |
| Bra008017.1-P | Field mustard | nucleus | 53.87 | 51.23 |
| CDX72877 | Canola | nucleus | 54.19 | 51.22 |
| CDY12528 | Canola | nucleus | 46.45 | 51.06 |
| CDX82171 | Canola | nucleus | 53.55 | 50.92 |
| Bra016080.1-P | Field mustard | nucleus | 52.9 | 50.46 |
| CDX96382 | Canola | nucleus | 52.9 | 50.46 |
| PGSC0003DMT400005446 | Potato | nucleus | 56.13 | 50.43 |
| CDY46652 | Canola | nucleus | 45.16 | 49.65 |
| Solyc04g074810.2.1 | Tomato | extracellular | 55.81 | 48.73 |
| PGSC0003DMT400045820 | Potato | nucleus | 46.45 | 48.65 |
| VIT_02s0012g01450.t01 | Wine grape | nucleus | 48.39 | 47.62 |
| AT1G22490.2 | Thale cress | nucleus | 46.77 | 44.48 |
| VIT_05s0020g02700.t01 | Wine grape | nucleus | 25.16 | 41.05 |
| VIT_15s0048g02510.t01 | Wine grape | nucleus | 37.74 | 32.41 |
| VIT_05s0029g00050.t01 | Wine grape | nucleus | 35.48 | 27.71 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 30.0 | 27.51 |
Protein Annotations
| EntrezGene:100259155 | wikigene:100259155 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:CBI19212 | ProteinID:CBI19212.3 |
| ncoils:Coil | UniProt:E0CRQ8 | EMBL:FN595227 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EntrezGene:LOC100259155 | wikigene:LOC100259155 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11969 | PANTHER:PTHR11969:SF26 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI00015C7C95 | ArrayExpress:VIT_18s0001g06650 | EnsemblPlantsGene:VIT_18s0001g06650 | EnsemblPlants:VIT_18s0001g06650.t01 | RefSeq:XP_002285733 | RefSeq:XP_002285733.2 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr18:-:5009725..5011125
Molecular Weight (calculated)
34623.9 Da
IEP (calculated)
6.259
GRAVY (calculated)
-0.501
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEAVVFPT LDPFSYGCKG GGWSYDFDLQ EEDKALLGIL GNNTEPGSHG NWDSSSPSVM QNAMEWDHNS SPEACTGDQS LAGVFPPTEE PPSTSTTGRR
101: KRRRTKSCKN KEEVENQRMT HIAVERNRRK QMNEYLAVLR SLMPPSYTQR GDQASIIGGA INFVKELEQL LQSLEAEKSS KQQTNNSVSS PFSNFFTFPQ
201: YSTRATHCTK DSMMGDNRWA VADIEVTMVE SHANIKILSK RKTKQLLKIV AGFQSLSLTI LHLNVTTFDQ MVLYSLSVKV EEECQLTTVD EIAAAVNQML
301: RRIQEAAALN
101: KRRRTKSCKN KEEVENQRMT HIAVERNRRK QMNEYLAVLR SLMPPSYTQR GDQASIIGGA INFVKELEQL LQSLEAEKSS KQQTNNSVSS PFSNFFTFPQ
201: YSTRATHCTK DSMMGDNRWA VADIEVTMVE SHANIKILSK RKTKQLLKIV AGFQSLSLTI LHLNVTTFDQ MVLYSLSVKV EEECQLTTVD EIAAAVNQML
301: RRIQEAAALN
001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
Arabidopsis Description
BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.