Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68274 | Canola | nucleus | 98.15 | 98.15 |
| CDY37634 | Canola | nucleus | 58.95 | 83.77 |
| CDX96382 | Canola | nucleus | 82.1 | 81.85 |
| AT1G72210.1 | Thale cress | nucleus | 80.25 | 81.25 |
| CDX72877 | Canola | nucleus | 81.17 | 80.18 |
| CDX82171 | Canola | nucleus | 79.94 | 79.45 |
| CDY03650 | Canola | nucleus | 79.32 | 78.83 |
| CDY41479 | Canola | nucleus | 57.72 | 65.38 |
| CDX91680 | Canola | nucleus | 56.79 | 64.34 |
| CDY04811 | Canola | nucleus | 58.33 | 62.79 |
| CDY21365 | Canola | nucleus | 58.02 | 62.46 |
| CDY12528 | Canola | nucleus | 53.7 | 61.7 |
| CDY46652 | Canola | nucleus | 52.47 | 60.28 |
| VIT_18s0001g06650.t01 | Wine grape | nucleus | 52.16 | 54.52 |
| KRH62289 | Soybean | nucleus | 50.93 | 50.93 |
| Solyc12g087850.1.1 | Tomato | nucleus | 25.31 | 50.62 |
| KRH16792 | Soybean | nucleus | 49.69 | 49.69 |
| KRH53000 | Soybean | nucleus | 50.0 | 48.5 |
| KRH72411 | Soybean | nucleus | 49.69 | 46.53 |
| PGSC0003DMT400005446 | Potato | nucleus | 49.07 | 46.09 |
| Solyc04g074810.2.1 | Tomato | extracellular | 48.77 | 44.51 |
| PGSC0003DMT400045820 | Potato | nucleus | 40.12 | 43.92 |
| CDY65719 | Canola | nucleus | 37.35 | 40.2 |
| CDY41734 | Canola | nucleus | 37.04 | 39.87 |
| CDY37820 | Canola | nucleus | 25.31 | 37.61 |
| CDY03201 | Canola | cytosol | 20.37 | 36.46 |
| CDY63053 | Canola | nucleus | 35.19 | 35.19 |
| CDX77682 | Canola | nucleus | 34.88 | 34.88 |
| CDY11386 | Canola | nucleus | 29.94 | 34.77 |
| CDY33966 | Canola | nucleus | 32.1 | 34.44 |
| CDY35175 | Canola | nucleus | 29.32 | 32.31 |
| CDY51710 | Canola | nucleus | 30.86 | 32.15 |
| CDY07143 | Canola | nucleus | 29.94 | 31.29 |
| CDY41561 | Canola | nucleus | 29.63 | 30.77 |
| CDX80049 | Canola | nucleus | 29.32 | 30.35 |
| CDY68483 | Canola | nucleus | 29.94 | 30.31 |
| CDX76598 | Canola | nucleus | 29.32 | 30.16 |
| CDY48013 | Canola | nucleus | 29.01 | 29.56 |
| CDY55926 | Canola | nucleus | 29.32 | 29.41 |
| CDY27521 | Canola | nucleus | 27.78 | 29.03 |
| CDY24717 | Canola | nucleus | 17.59 | 28.36 |
| CDY05233 | Canola | nucleus | 17.28 | 27.45 |
| CDY58338 | Canola | nucleus | 17.28 | 27.05 |
| CDY08066 | Canola | nucleus | 17.28 | 27.05 |
| CDY55929 | Canola | nucleus | 27.47 | 26.65 |
| CDY18843 | Canola | nucleus | 16.36 | 26.37 |
| CDX85167 | Canola | nucleus | 29.32 | 24.42 |
| CDX77460 | Canola | nucleus | 26.54 | 24.16 |
| CDX92996 | Canola | nucleus | 29.94 | 23.95 |
| CDX94841 | Canola | nucleus | 29.32 | 23.28 |
| CDY19692 | Canola | nucleus | 24.07 | 22.1 |
| CDY47059 | Canola | nucleus | 23.77 | 22.06 |
| CDY14397 | Canola | nucleus | 24.07 | 21.97 |
| CDY18083 | Canola | nucleus | 25.93 | 21.88 |
| CDY38734 | Canola | nucleus | 23.46 | 21.53 |
| CDY64587 | Canola | nucleus | 24.38 | 21.29 |
| CDX96201 | Canola | nucleus | 22.22 | 20.45 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078IKL0 | UniProt:A0A078IKL0 | EnsemblPlants:CDY50447 | ProteinID:CDY50447 |
| ProteinID:CDY50447.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00096725001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11969 |
| PANTHER:PTHR11969:SF26 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEE08E | InterPro:bHLH_dom | SEG:seg |
Description
BnaC06g24170DBnaC06g24170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKL0]
Coordinates
chrLK032911:+:87322..89490
Molecular Weight (calculated)
36710.8 Da
IEP (calculated)
5.298
GRAVY (calculated)
-0.762
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEAVVYPQ DPFSYISYKD YQFHDLYFQQ EEDRDPLETK NNVKLGQEQR QGFESIYYNG NSGDNNDDYN YNDQKDLQWP RDDLPYGSIV DTENQPPTSV
101: LATGEGRRKR RRTKSSKNKE EIENQRMTHI AVERNRRKQM NEYLAVLRSL MPPSYAQRGD QASVVGGAIN YLKELEHHLQ SMDPTVNTPA TKEAGDGAGD
201: LMNTIAASSS GPFSDFFAFP QYSRRPSSSS VAEGTAEIEV TMVESHANVK ILAKKRPKQL LKLVASIQSL RLTVLHLNVT TRDDSVLYSI SLKVEEGSQL
301: NTVEDIAAAV NQILRRIEED SSFR
101: LATGEGRRKR RRTKSSKNKE EIENQRMTHI AVERNRRKQM NEYLAVLRSL MPPSYAQRGD QASVVGGAIN YLKELEHHLQ SMDPTVNTPA TKEAGDGAGD
201: LMNTIAASSS GPFSDFFAFP QYSRRPSSSS VAEGTAEIEV TMVESHANVK ILAKKRPKQL LKLVASIQSL RLTVLHLNVT TRDDSVLYSI SLKVEEGSQL
301: NTVEDIAAAV NQILRRIEED SSFR
001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
Arabidopsis Description
BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.