Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35175 | Canola | nucleus | 88.95 | 54.76 |
| CDY63053 | Canola | nucleus | 80.66 | 45.06 |
| CDX77682 | Canola | nucleus | 80.11 | 44.75 |
| AT5G46690.1 | Thale cress | nucleus | 80.11 | 44.34 |
| GSMUA_Achr11P... | Banana | mitochondrion | 39.23 | 37.57 |
| HORVU2Hr1G106030.2 | Barley | cytosol, mitochondrion, nucleus | 18.78 | 33.01 |
| CDY37634 | Canola | nucleus | 36.46 | 28.95 |
| KRH75598 | Soybean | nucleus | 43.09 | 25.74 |
| Solyc08g076820.2.1 | Tomato | nucleus | 46.41 | 25.61 |
| PGSC0003DMT400045210 | Potato | nucleus | 46.41 | 25.45 |
| KRH45428 | Soybean | nucleus | 41.99 | 25.08 |
| CDY41479 | Canola | nucleus | 38.67 | 24.48 |
| CDX91680 | Canola | nucleus | 38.12 | 24.13 |
| CDY12528 | Canola | nucleus | 37.57 | 24.11 |
| CDY46652 | Canola | nucleus | 37.02 | 23.76 |
| VIT_02s0012g01450.t01 | Wine grape | nucleus | 40.88 | 23.49 |
| GSMUA_Achr11P... | Banana | nucleus | 38.12 | 23.0 |
| CDY04811 | Canola | nucleus | 38.12 | 22.92 |
| CDY21365 | Canola | nucleus | 38.12 | 22.92 |
| Zm00001d002492_P001 | Maize | mitochondrion | 20.99 | 21.59 |
| CDX96382 | Canola | nucleus | 38.67 | 21.54 |
| TraesCS6A01G264200.1 | Wheat | nucleus | 39.78 | 21.43 |
| Zm00001d051509_P001 | Maize | nucleus | 39.23 | 21.39 |
| TraesCS6D01G250700.1 | Wheat | nucleus | 40.88 | 21.33 |
| TraesCS6B01G291200.1 | Wheat | nucleus | 39.23 | 21.13 |
| TraesCS2B01G469800.1 | Wheat | nucleus | 38.12 | 21.1 |
| TraesCS2B01G469700.1 | Wheat | nucleus | 38.12 | 21.1 |
| EES07423 | Sorghum | nucleus | 40.33 | 20.92 |
| TraesCS2D01G448000.1 | Wheat | nucleus | 38.12 | 20.85 |
| TraesCS2A01G448800.1 | Wheat | nucleus | 38.12 | 20.85 |
| CDY24717 | Canola | nucleus | 22.65 | 20.4 |
| CDY18843 | Canola | nucleus | 22.65 | 20.4 |
| CDY50447 | Canola | nucleus | 36.46 | 20.37 |
| CDX68274 | Canola | nucleus | 36.46 | 20.37 |
| HORVU6Hr1G067000.2 | Barley | nucleus | 38.67 | 20.17 |
| CDX72877 | Canola | nucleus | 36.46 | 20.12 |
| CDY03650 | Canola | nucleus | 35.91 | 19.94 |
| CDY08066 | Canola | nucleus | 22.65 | 19.81 |
| CDY58338 | Canola | nucleus | 22.65 | 19.81 |
| CDX82171 | Canola | nucleus | 35.36 | 19.63 |
| CDY05233 | Canola | nucleus | 22.1 | 19.61 |
| KXG27015 | Sorghum | cytosol | 37.02 | 19.53 |
| Zm00001d026046_P001 | Maize | nucleus | 35.91 | 19.35 |
| Os02t0691500-01 | Rice | nucleus | 39.78 | 19.3 |
| Zm00001d017677_P001 | Maize | nucleus | 38.67 | 19.13 |
| CDY65719 | Canola | nucleus | 31.49 | 18.94 |
| CDY41734 | Canola | nucleus | 31.49 | 18.94 |
| CDY51710 | Canola | nucleus | 32.04 | 18.65 |
| CDY11386 | Canola | nucleus | 28.18 | 18.28 |
| CDY07143 | Canola | nucleus | 30.94 | 18.06 |
| CDY41561 | Canola | nucleus | 30.94 | 17.95 |
| CDY33966 | Canola | nucleus | 29.28 | 17.55 |
| CDY37820 | Canola | nucleus | 20.99 | 17.43 |
| CDX80049 | Canola | nucleus | 29.83 | 17.25 |
| CDX77460 | Canola | nucleus | 32.6 | 16.57 |
| CDX76598 | Canola | nucleus | 28.73 | 16.51 |
| CDY48013 | Canola | nucleus | 28.73 | 16.35 |
| CDY27521 | Canola | nucleus | 27.62 | 16.13 |
| KXG27016 | Sorghum | cytosol, nucleus, plastid | 29.83 | 15.61 |
| CDX85167 | Canola | nucleus | 33.15 | 15.42 |
| CDX92996 | Canola | nucleus | 33.7 | 15.06 |
| CDX94841 | Canola | nucleus | 33.7 | 14.95 |
| CDY18083 | Canola | nucleus | 31.49 | 14.84 |
| CDY64587 | Canola | nucleus | 29.83 | 14.56 |
| CDY68483 | Canola | nucleus | 25.41 | 14.38 |
| CDY47059 | Canola | nucleus | 27.07 | 14.04 |
| CDY55926 | Canola | nucleus | 24.86 | 13.93 |
| CDY19692 | Canola | nucleus | 27.07 | 13.88 |
| CDY14397 | Canola | nucleus | 27.07 | 13.8 |
| CDY38734 | Canola | nucleus | 26.52 | 13.6 |
| CDX96201 | Canola | nucleus | 25.97 | 13.35 |
| CDY55929 | Canola | nucleus | 21.55 | 11.68 |
Protein Annotations
| EnsemblPlants:CDY03201 | EnsemblPlantsGene:GSBRNA2T00115696001 | Gene3D:4.10.280.10 | GO:A0A078EPQ1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR11969 | PANTHER:PTHR11969:SF31 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDY03201 |
| ProteinID:CDY03201.1 | SEG:seg | SUPFAM:SSF47459 | UniParc:UPI0004EDB991 | MapMan:15.5.32 | : |
Description
BnaC09g19550D
Coordinates
chrLK031941:-:679119..686898
Molecular Weight (calculated)
20022.7 Da
IEP (calculated)
7.145
GRAVY (calculated)
-0.303
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQHLSALRS LMPQPFAQKG DQASIVGGAI DFIKELEQQL LSLEAQKLHK AQTNQTATSS TSQDSDGERE NARQPCSLSL SHFFLHSYDP SQENRNGTTS
101: SVRTAMEDLE VTLIETHANI KILSRRRGFR WTTVATTGPP QLLKLMAALQ SVSLSVVHLS VTTLDTFAIY SISTKEQFIT C
101: SVRTAMEDLE VTLIETHANI KILSRRRGFR WTTVATTGPP QLLKLMAALQ SVSLSVVHLS VTTLDTFAIY SISTKEQFIT C
001: MTLEALSSNG LLNFLLSETL SPTPFKSLVD LEPLPENDVI ISKNTISEIS NQEPPPQRQP PATNRGKKRR RRKPRVCKNE EEAENQRMTH IAVERNRRRQ
101: MNQHLSVLRS LMPQPFAHKG DQASIVGGAI DFIKELEHKL LSLEAQKHHN AKLNQSVTSS TSQDSNGEQE NPHQPSSLSL SQFFLHSYDP SQENRNGSTS
201: SVKTPMEDLE VTLIETHANI RILSRRRGFR WSTLATTKPP QLSKLVASLQ SLSLSILHLS VTTLDNYAIY SISAKVIKLK PYHLNRTKPD
101: MNQHLSVLRS LMPQPFAHKG DQASIVGGAI DFIKELEHKL LSLEAQKHHN AKLNQSVTSS TSQDSNGEQE NPHQPSSLSL SQFFLHSYDP SQENRNGSTS
201: SVKTPMEDLE VTLIETHANI RILSRRRGFR WSTLATTKPP QLSKLVASLQ SLSLSILHLS VTTLDNYAIY SISAKVIKLK PYHLNRTKPD
Arabidopsis Description
BHLH71Transcription factor bHLH71 [Source:UniProtKB/Swiss-Prot;Acc:Q56XR0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.