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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • nucleus 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, secretory
iPSORT:secretory
MultiLoc:nucleus
PProwler:secretory
TargetP:secretory
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G448800.1 Wheat nucleus 92.14 92.14
TraesCS2B01G469800.1 Wheat nucleus 89.12 90.21
TraesCS2B01G469700.1 Wheat nucleus 89.12 90.21
HORVU2Hr1G106030.2 Barley cytosol, mitochondrion, nucleus 27.49 88.35
GSMUA_Achr11P... Banana mitochondrion 35.35 61.9
TraesCS6D01G250700.1 Wheat nucleus 62.24 59.37
Zm00001d026046_P001 Maize nucleus 52.57 51.79
GSMUA_Achr11P... Banana nucleus 46.83 51.67
Zm00001d002492_P001 Maize mitochondrion 26.28 49.43
KXG27015 Sorghum cytosol 50.15 48.4
KRH45428 Soybean nucleus 40.79 44.55
KRH75598 Soybean nucleus 40.79 44.55
TraesCS6D01G294900.1 Wheat nucleus 41.99 43.57
VIT_02s0012g01450.t01 Wine grape nucleus 41.09 43.17
Solyc08g076820.2.1 Tomato nucleus 42.3 42.68
PGSC0003DMT400045210 Potato nucleus 42.3 42.42
TraesCS4D01G302700.1 Wheat nucleus 39.27 41.94
TraesCS6D01G315200.1 Wheat nucleus 41.09 39.77
TraesCS5D01G255100.1 Wheat nucleus 39.27 38.69
CDY03201 Canola cytosol 20.85 38.12
KXG27016 Sorghum cytosol, nucleus, plastid 38.67 36.99
Bra025007.1-P Field mustard nucleus 30.51 36.86
Bra017533.1-P Field mustard nucleus 31.72 36.33
AT5G46690.1 Thale cress nucleus 35.65 36.09
CDX77682 Canola nucleus 35.05 35.8
CDY35175 Canola nucleus 31.72 35.71
CDY63053 Canola nucleus 34.74 35.49
TraesCS2D01G122800.1 Wheat nucleus 21.15 32.56
TraesCS4D01G342000.1 Wheat extracellular 28.1 30.69
TraesCS1D01G289400.1 Wheat nucleus 29.31 23.15
TraesCS7D01G327900.1 Wheat nucleus 23.26 21.15
Protein Annotations
EnsemblPlants:TraesCS2D01G448000.1EnsemblPlantsGene:TraesCS2D01G448000Gene3D:4.10.280.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638InterPro:bHLH_domncoils:Coil
PANTHER:PTHR11969PANTHER:PTHR11969:SF31PFAM:PF00010PFscan:PS50888SEG:segSMART:SM00353
SUPFAM:SSF47459TIGR:cd00083MapMan:15.5.32:::
Description
No Description!
Coordinates
chr2D:-:557792749..557795689
Molecular Weight (calculated)
35379.0 Da
IEP (calculated)
6.714
GRAVY (calculated)
-0.223
Length
331 amino acids
Sequence
(BLAST)
001: MTLDALCAAS DVLVYDTFNA AAAASAAPAE SGLLFCDAAG AAWMAGSAAA AAQAETAVPV EEGEKAQGRR KRRRRARSCK NREDAESQRM THIAVERNRR
101: RQMNEYLAAL RSLMPESYAH RGDQASIVGG AIDFVKELEQ LLQSLEAQKR TLLAQQQQDH KPPPIRDAMP SPSITVTAAA TTTTRSGSGE GKQAAATRDG
201: MSPPFAGFFT YPQFVCRLPP RDDADDHAGA ADIEVTLVET HASVRVMAPR RPGQLLRMVA GMEALRLTVL HLNVTTLGSL ALYSLSVKVE EGCGLTTADD
301: IAASVHHVLC LVDAEATSQR LLAGGQQEIS R
Best Arabidopsis Sequence Match ( AT1G22490.1 )
(BLAST)
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.