Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- nucleus 3
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2A01G448800.1 | Wheat | nucleus | 92.14 | 92.14 |
TraesCS2B01G469800.1 | Wheat | nucleus | 89.12 | 90.21 |
TraesCS2B01G469700.1 | Wheat | nucleus | 89.12 | 90.21 |
HORVU2Hr1G106030.2 | Barley | cytosol, mitochondrion, nucleus | 27.49 | 88.35 |
GSMUA_Achr11P... | Banana | mitochondrion | 35.35 | 61.9 |
TraesCS6D01G250700.1 | Wheat | nucleus | 62.24 | 59.37 |
Zm00001d026046_P001 | Maize | nucleus | 52.57 | 51.79 |
GSMUA_Achr11P... | Banana | nucleus | 46.83 | 51.67 |
Zm00001d002492_P001 | Maize | mitochondrion | 26.28 | 49.43 |
KXG27015 | Sorghum | cytosol | 50.15 | 48.4 |
KRH45428 | Soybean | nucleus | 40.79 | 44.55 |
KRH75598 | Soybean | nucleus | 40.79 | 44.55 |
TraesCS6D01G294900.1 | Wheat | nucleus | 41.99 | 43.57 |
VIT_02s0012g01450.t01 | Wine grape | nucleus | 41.09 | 43.17 |
Solyc08g076820.2.1 | Tomato | nucleus | 42.3 | 42.68 |
PGSC0003DMT400045210 | Potato | nucleus | 42.3 | 42.42 |
TraesCS4D01G302700.1 | Wheat | nucleus | 39.27 | 41.94 |
TraesCS6D01G315200.1 | Wheat | nucleus | 41.09 | 39.77 |
TraesCS5D01G255100.1 | Wheat | nucleus | 39.27 | 38.69 |
CDY03201 | Canola | cytosol | 20.85 | 38.12 |
KXG27016 | Sorghum | cytosol, nucleus, plastid | 38.67 | 36.99 |
Bra025007.1-P | Field mustard | nucleus | 30.51 | 36.86 |
Bra017533.1-P | Field mustard | nucleus | 31.72 | 36.33 |
AT5G46690.1 | Thale cress | nucleus | 35.65 | 36.09 |
CDX77682 | Canola | nucleus | 35.05 | 35.8 |
CDY35175 | Canola | nucleus | 31.72 | 35.71 |
CDY63053 | Canola | nucleus | 34.74 | 35.49 |
TraesCS2D01G122800.1 | Wheat | nucleus | 21.15 | 32.56 |
TraesCS4D01G342000.1 | Wheat | extracellular | 28.1 | 30.69 |
TraesCS1D01G289400.1 | Wheat | nucleus | 29.31 | 23.15 |
TraesCS7D01G327900.1 | Wheat | nucleus | 23.26 | 21.15 |
Protein Annotations
EnsemblPlants:TraesCS2D01G448000.1 | EnsemblPlantsGene:TraesCS2D01G448000 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
PANTHER:PTHR11969 | PANTHER:PTHR11969:SF31 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr2D:-:557792749..557795689
Molecular Weight (calculated)
35379.0 Da
IEP (calculated)
6.714
GRAVY (calculated)
-0.223
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLDALCAAS DVLVYDTFNA AAAASAAPAE SGLLFCDAAG AAWMAGSAAA AAQAETAVPV EEGEKAQGRR KRRRRARSCK NREDAESQRM THIAVERNRR
101: RQMNEYLAAL RSLMPESYAH RGDQASIVGG AIDFVKELEQ LLQSLEAQKR TLLAQQQQDH KPPPIRDAMP SPSITVTAAA TTTTRSGSGE GKQAAATRDG
201: MSPPFAGFFT YPQFVCRLPP RDDADDHAGA ADIEVTLVET HASVRVMAPR RPGQLLRMVA GMEALRLTVL HLNVTTLGSL ALYSLSVKVE EGCGLTTADD
301: IAASVHHVLC LVDAEATSQR LLAGGQQEIS R
101: RQMNEYLAAL RSLMPESYAH RGDQASIVGG AIDFVKELEQ LLQSLEAQKR TLLAQQQQDH KPPPIRDAMP SPSITVTAAA TTTTRSGSGE GKQAAATRDG
201: MSPPFAGFFT YPQFVCRLPP RDDADDHAGA ADIEVTLVET HASVRVMAPR RPGQLLRMVA GMEALRLTVL HLNVTTLGSL ALYSLSVKVE EGCGLTTADD
301: IAASVHHVLC LVDAEATSQR LLAGGQQEIS R
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.