Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY63053 | Canola | nucleus | 98.46 | 98.46 |
| AT5G46690.1 | Thale cress | nucleus | 85.19 | 84.4 |
| CDY03201 | Canola | cytosol | 44.75 | 80.11 |
| CDY35175 | Canola | nucleus | 69.14 | 76.19 |
| HORVU2Hr1G106030.2 | Barley | cytosol, mitochondrion, nucleus | 18.21 | 57.28 |
| GSMUA_Achr11P... | Banana | mitochondrion | 31.17 | 53.44 |
| VIT_02s0012g01450.t01 | Wine grape | nucleus | 45.99 | 47.3 |
| Solyc08g076820.2.1 | Tomato | nucleus | 47.84 | 47.26 |
| KRH75598 | Soybean | nucleus | 44.14 | 47.19 |
| KRH45428 | Soybean | nucleus | 43.83 | 46.86 |
| PGSC0003DMT400045210 | Potato | nucleus | 47.53 | 46.67 |
| CDY37634 | Canola | nucleus | 32.41 | 46.05 |
| GSMUA_Achr11P... | Banana | nucleus | 39.51 | 42.67 |
| CDY41479 | Canola | nucleus | 34.88 | 39.51 |
| CDX91680 | Canola | nucleus | 34.26 | 38.81 |
| CDY21365 | Canola | nucleus | 34.88 | 37.54 |
| CDY04811 | Canola | nucleus | 34.57 | 37.21 |
| CDX96382 | Canola | nucleus | 36.73 | 36.62 |
| CDY12528 | Canola | nucleus | 31.48 | 36.17 |
| TraesCS6A01G264200.1 | Wheat | nucleus | 37.04 | 35.71 |
| TraesCS2A01G448800.1 | Wheat | nucleus | 36.42 | 35.65 |
| CDY65719 | Canola | nucleus | 33.02 | 35.55 |
| TraesCS2B01G469700.1 | Wheat | nucleus | 35.8 | 35.47 |
| TraesCS2B01G469800.1 | Wheat | nucleus | 35.8 | 35.47 |
| CDX72877 | Canola | nucleus | 35.8 | 35.37 |
| Zm00001d051509_P001 | Maize | nucleus | 36.11 | 35.24 |
| CDY41734 | Canola | nucleus | 32.72 | 35.22 |
| TraesCS6B01G291200.1 | Wheat | nucleus | 36.42 | 35.12 |
| TraesCS2D01G448000.1 | Wheat | nucleus | 35.8 | 35.05 |
| CDX82171 | Canola | nucleus | 35.19 | 34.97 |
| CDX68274 | Canola | nucleus | 34.88 | 34.88 |
| CDY50447 | Canola | nucleus | 34.88 | 34.88 |
| TraesCS6D01G250700.1 | Wheat | nucleus | 37.35 | 34.87 |
| CDY37820 | Canola | nucleus | 23.46 | 34.86 |
| CDY03650 | Canola | nucleus | 34.88 | 34.66 |
| HORVU6Hr1G067000.2 | Barley | nucleus | 37.04 | 34.58 |
| CDY46652 | Canola | nucleus | 29.94 | 34.4 |
| EES07423 | Sorghum | nucleus | 36.73 | 34.1 |
| Zm00001d026046_P001 | Maize | nucleus | 34.26 | 33.04 |
| CDY51710 | Canola | nucleus | 31.48 | 32.8 |
| KXG27015 | Sorghum | cytosol | 34.57 | 32.65 |
| Os02t0691500-01 | Rice | nucleus | 37.04 | 32.17 |
| CDY07143 | Canola | nucleus | 30.25 | 31.61 |
| Zm00001d017677_P001 | Maize | nucleus | 35.49 | 31.42 |
| CDY33966 | Canola | nucleus | 28.4 | 30.46 |
| CDY11386 | Canola | nucleus | 25.93 | 30.11 |
| CDY24717 | Canola | nucleus | 18.52 | 29.85 |
| CDY58338 | Canola | nucleus | 18.83 | 29.47 |
| CDY08066 | Canola | nucleus | 18.83 | 29.47 |
| CDY18843 | Canola | nucleus | 18.21 | 29.35 |
| Zm00001d002492_P001 | Maize | mitochondrion | 15.74 | 28.98 |
| CDY05233 | Canola | nucleus | 18.21 | 28.92 |
| CDY41561 | Canola | nucleus | 27.47 | 28.53 |
| CDY48013 | Canola | nucleus | 27.47 | 27.99 |
| CDX80049 | Canola | nucleus | 26.85 | 27.8 |
| KXG27016 | Sorghum | cytosol, nucleus, plastid | 29.32 | 27.46 |
| CDY27521 | Canola | nucleus | 26.23 | 27.42 |
| CDX76598 | Canola | nucleus | 26.54 | 27.3 |
| CDY68483 | Canola | nucleus | 25.93 | 26.25 |
| CDY55926 | Canola | nucleus | 25.62 | 25.7 |
| CDX77460 | Canola | nucleus | 28.09 | 25.56 |
| CDX85167 | Canola | nucleus | 29.94 | 24.94 |
| CDX92996 | Canola | nucleus | 30.56 | 24.44 |
| CDX94841 | Canola | nucleus | 30.25 | 24.02 |
| CDY19692 | Canola | nucleus | 24.69 | 22.66 |
| CDY14397 | Canola | nucleus | 24.69 | 22.54 |
| CDY55929 | Canola | nucleus | 22.84 | 22.16 |
| CDY18083 | Canola | nucleus | 26.23 | 22.14 |
| CDY47059 | Canola | nucleus | 23.77 | 22.06 |
| CDY64587 | Canola | nucleus | 24.69 | 21.56 |
| CDY38734 | Canola | nucleus | 23.46 | 21.53 |
| CDX96201 | Canola | nucleus | 22.22 | 20.45 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078CLR6 | EnsemblPlants:CDX77682 | ProteinID:CDX77682 | ProteinID:CDX77682.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00128648001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11969 |
| PANTHER:PTHR11969:SF31 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EC088B | InterPro:bHLH_dom | SEG:seg |
Description
BnaC07g19360D
Coordinates
chrLK031812:+:832164..834015
Molecular Weight (calculated)
36164.0 Da
IEP (calculated)
6.648
GRAVY (calculated)
-0.402
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLEALSSNG LLNFLLSESL SPTPFKSLLD LDPSPENDII IIPKNTIPEM SQQEPASRQP PPASRGKKRR RRKPRVCKNE EEAENQRITH IAVERNRRRQ
101: MNQHLSVLRS LMPQPFSQKG DQASIVGGAI DFIKELEHQL LSLEAQKLQK DKLSQTVISS TSQDSNCEPE NPHLSLSQFF LHSYDPSQEN RNGSTSSVKT
201: AMEDLEVTLI ETHANIRILS RRRGFQWTSV VATTGPPQLS KLVAALHSLS LSVLHLSVTT LETFAIYSIS TKVEESCQLS SVDDIAGAVH HMLSIIEEEP
301: FCCSTIPELP FTFPLNHTNA THSL
101: MNQHLSVLRS LMPQPFSQKG DQASIVGGAI DFIKELEHQL LSLEAQKLQK DKLSQTVISS TSQDSNCEPE NPHLSLSQFF LHSYDPSQEN RNGSTSSVKT
201: AMEDLEVTLI ETHANIRILS RRRGFQWTSV VATTGPPQLS KLVAALHSLS LSVLHLSVTT LETFAIYSIS TKVEESCQLS SVDDIAGAVH HMLSIIEEEP
301: FCCSTIPELP FTFPLNHTNA THSL
001: MTLEALSSNG LLNFLLSETL SPTPFKSLVD LEPLPENDVI ISKNTISEIS NQEPPPQRQP PATNRGKKRR RRKPRVCKNE EEAENQRMTH IAVERNRRRQ
101: MNQHLSVLRS LMPQPFAHKG DQASIVGGAI DFIKELEHKL LSLEAQKHHN AKLNQSVTSS TSQDSNGEQE NPHQPSSLSL SQFFLHSYDP SQENRNGSTS
201: SVKTPMEDLE VTLIETHANI RILSRRRGFR WSTLATTKPP QLSKLVASLQ SLSLSILHLS VTTLDNYAIY SISAKVEESC QLSSVDDIAG AVHHMLSIIE
301: EEPFCCSSMS ELPFDFSLNH SNVTHSL
101: MNQHLSVLRS LMPQPFAHKG DQASIVGGAI DFIKELEHKL LSLEAQKHHN AKLNQSVTSS TSQDSNGEQE NPHQPSSLSL SQFFLHSYDP SQENRNGSTS
201: SVKTPMEDLE VTLIETHANI RILSRRRGFR WSTLATTKPP QLSKLVASLQ SLSLSILHLS VTTLDNYAIY SISAKVEESC QLSSVDDIAG AVHHMLSIIE
301: EEPFCCSSMS ELPFDFSLNH SNVTHSL
Arabidopsis Description
BHLH71Transcription factor bHLH71 [Source:UniProtKB/Swiss-Prot;Acc:Q56XR0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.