Factsheet for HORVU6Hr1G067000.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G291200.1	Wheat	nucleus	89.05	91.96
TraesCS6A01G264200.1	Wheat	nucleus	88.76	91.67
TraesCS6D01G250700.1	Wheat	nucleus	90.2	90.2
HORVU2Hr1G106030.2	Barley	cytosol, mitochondrion, nucleus	22.48	75.73
GSMUA_Achr11P...	Banana	mitochondrion	34.58	63.49
EES07423	Sorghum	nucleus	62.82	62.46
Zm00001d051509_P001	Maize	nucleus	58.21	60.84
Os02t0691500-01	Rice	nucleus	64.55	60.05
Zm00001d017677_P001	Maize	nucleus	61.67	58.47
GSMUA_Achr11P...	Banana	nucleus	44.96	52.0
VIT_02s0012g01450.t01	Wine grape	nucleus	41.5	45.71
KRH45428	Soybean	nucleus	39.48	45.21
KRH75598	Soybean	nucleus	39.19	44.88
PGSC0003DMT400045210	Potato	nucleus	40.63	42.73
Solyc08g076820.2.1	Tomato	nucleus	40.35	42.68
CDY03201	Canola	cytosol	20.17	38.67
Bra025007.1-P	Field mustard	nucleus	29.97	37.96
HORVU6Hr1G081120.4	Barley	nucleus	37.46	37.57
CDY63053	Canola	nucleus	34.58	37.04
CDX77682	Canola	nucleus	34.58	37.04
AT5G46690.1	Thale cress	nucleus	33.72	35.78
Bra017533.1-P	Field mustard	nucleus	29.39	35.29
CDY35175	Canola	nucleus	28.53	33.67
HORVU2Hr1G020990.1	Barley	nucleus	22.19	32.35
HORVU4Hr1G084850.2	Barley	extracellular	27.95	32.01
HORVU4Hr1G078270.2	Barley	plastid	38.9	30.54
HORVU5Hr1G070000.3	Barley	nucleus, plastid	38.33	28.18
HORVU1Hr1G071330.3	Barley	nucleus	29.11	23.17
HORVU7Hr1G079250.1	Barley	cytosol	21.04	20.0

Protein Annotations

EMBL:AK357579	EnsemblPlants:HORVU6Hr1G067000.2	EnsemblPlantsGene:HORVU6Hr1G067000	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR11969	PANTHER:PTHR11969:SF31	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00020050AD	UniProt:F2D122	MapMan:15.5.32	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D122]

Coordinates

chrchr6H:+:464608442..464612015

Molecular Weight (calculated)

36883.6 Da

IEP (calculated)

6.309

GRAVY (calculated)

-0.156

Length

347 amino acids

Sequence
(BLAST)

001: MALVDALCAS SVENAALVYN TFNAAGFLLD NAAAGFYDGA GIASGPAHEL QAPDRAPGLS AVGDVAASLE KQATSSPAPP RRKRRRRARS CKSREEAECQ
101: RMTHIAVERN RRRQMNEYLV LLRSLMPESY VQRGDQASIV GGAIDFVKEL EQQLQSLEAQ KRALARQQQH KAGCDATPLP ARASTSGGNG GAACVESTSN
201: CSSSVTEADG ASDAPPFAGF FTYPQYVWCQ SPRDATTLSA DESRAGVADI EVNLVETHAS LRVMAPRRPG QLLRMVAGLQ ALRLTVLHLN VTALGSLVLY
301: SLSLKVEEGC DLTTADDIAA AVHHVLCFIH AEAEAEATAQ QLLAPAP

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.