Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES07423 | Sorghum | nucleus | 81.33 | 77.36 |
| Zm00001d017677_P001 | Maize | nucleus | 78.61 | 71.31 |
| TraesCS6A01G264200.1 | Wheat | nucleus | 61.75 | 61.01 |
| GSMUA_Achr11P... | Banana | mitochondrion | 33.43 | 58.73 |
| TraesCS6B01G291200.1 | Wheat | nucleus | 59.34 | 58.63 |
| HORVU6Hr1G067000.2 | Barley | nucleus | 60.84 | 58.21 |
| TraesCS6D01G250700.1 | Wheat | nucleus | 59.94 | 57.35 |
| Os02t0691500-01 | Rice | nucleus | 60.84 | 54.16 |
| Zm00001d002492_P001 | Maize | mitochondrion | 25.9 | 48.86 |
| Zm00001d026046_P001 | Maize | nucleus | 46.08 | 45.54 |
| Zm00001d031260_P001 | Maize | nucleus | 28.92 | 44.44 |
| GSMUA_Achr11P... | Banana | nucleus | 39.76 | 44.0 |
| VIT_02s0012g01450.t01 | Wine grape | nucleus | 39.46 | 41.59 |
| KRH45428 | Soybean | nucleus | 37.35 | 40.92 |
| Solyc08g076820.2.1 | Tomato | nucleus | 40.36 | 40.85 |
| PGSC0003DMT400045210 | Potato | nucleus | 40.36 | 40.61 |
| KRH75598 | Soybean | nucleus | 36.75 | 40.26 |
| Zm00001d020790_P001 | Maize | nucleus | 39.46 | 39.46 |
| CDY03201 | Canola | cytosol | 21.39 | 39.23 |
| Zm00001d005939_P001 | Maize | nucleus | 38.55 | 38.44 |
| Bra025007.1-P | Field mustard | nucleus | 30.72 | 37.23 |
| Zm00001d052192_P001 | Maize | nucleus | 37.65 | 36.23 |
| CDY63053 | Canola | nucleus | 35.24 | 36.11 |
| CDX77682 | Canola | nucleus | 35.24 | 36.11 |
| Bra017533.1-P | Field mustard | nucleus | 30.72 | 35.29 |
| Zm00001d027987_P001 | Maize | nucleus | 34.64 | 34.74 |
| Zm00001d009778_P001 | Maize | nucleus | 22.89 | 34.7 |
| CDY35175 | Canola | nucleus | 30.72 | 34.69 |
| AT5G46690.1 | Thale cress | nucleus | 34.04 | 34.56 |
| Zm00001d018119_P001 | Maize | nucleus | 36.45 | 34.38 |
| Zm00001d027419_P001 | Maize | nucleus | 31.33 | 33.44 |
| Zm00001d048229_P001 | Maize | nucleus | 35.84 | 33.33 |
| Zm00001d048478_P001 | Maize | nucleus | 31.02 | 31.79 |
| Zm00001d009715_P001 | Maize | nucleus | 30.42 | 24.16 |
| Zm00001d046096_P001 | Maize | nucleus | 19.88 | 19.08 |
| Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 20.18 | 17.87 |
| Zm00001d016095_P001 | Maize | nucleus | 20.48 | 17.3 |
Protein Annotations
| EntrezGene:103653936 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:AQK54415.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | UniProt:K7TZI1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11969 |
| PANTHER:PTHR11969:SF31 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000221FB25 | EnsemblPlantsGene:Zm00001d051509 | EnsemblPlants:Zm00001d051509_P001 |
| EnsemblPlants:Zm00001d051509_T001 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
bHLH-transcription factor 13Putative HLH DNA-binding domain superfamily protein
Coordinates
chr4:+:160961176..160963697
Molecular Weight (calculated)
35452.1 Da
IEP (calculated)
7.528
GRAVY (calculated)
-0.114
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MPALVGAPPG DATVLVYDTF NAASFLLDTA AFCDGAGIIA VAPASANQQQ HAPPEREAPT RARKRRRRAR NCKSREEAET QRMTHIAVER NRRRQMNEYL
101: AALRSTMPEA YVQRGDQASI VGGAIVFVRE LEQQLQCLEA QKRKLLHVPA AAKPDATPAH ASSSSTKIRV DSAAASTSNC SSSSSVTEDA AGHARPAPFA
201: RFFTYPQYLW CHSARGAAAA AAAEEEEDGR RLGVADVEVA LVEAHGSIRV MTARRPGQLV CLVTALQALR LAVLHLSVTT LDALVLYSIS VKVEEGCGLA
301: TADDVAAAVH HVLCIVDAEA TDQQLLAAAR PQ
101: AALRSTMPEA YVQRGDQASI VGGAIVFVRE LEQQLQCLEA QKRKLLHVPA AAKPDATPAH ASSSSTKIRV DSAAASTSNC SSSSSVTEDA AGHARPAPFA
201: RFFTYPQYLW CHSARGAAAA AAAEEEEDGR RLGVADVEVA LVEAHGSIRV MTARRPGQLV CLVTALQALR LAVLHLSVTT LDALVLYSIS VKVEEGCGLA
301: TADDVAAAVH HVLCIVDAEA TDQQLLAAAR PQ
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.