Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016095_P001 | Maize | nucleus | 74.4 | 70.99 |
| Os02t0257500-00 | Rice | nucleus | 67.2 | 60.72 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 41.87 | 55.48 |
| GSMUA_Achr10P... | Banana | nucleus | 37.07 | 53.26 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 41.87 | 50.48 |
| Zm00001d046096_P001 | Maize | nucleus | 46.13 | 50.0 |
| Solyc03g007410.2.1 | Tomato | nucleus | 42.67 | 47.9 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 41.87 | 46.45 |
| KRH18131 | Soybean | nucleus | 41.6 | 46.43 |
| KRH64504 | Soybean | nucleus | 42.4 | 46.22 |
| PGSC0003DMT400023497 | Potato | nucleus | 43.73 | 46.2 |
| KRH53438 | Soybean | nucleus | 42.93 | 46.13 |
| KRH16521 | Soybean | nucleus | 40.53 | 45.92 |
| CDY47059 | Canola | nucleus | 42.4 | 45.56 |
| CDY38734 | Canola | nucleus | 42.67 | 45.33 |
| Zm00001d009778_P001 | Maize | nucleus | 26.4 | 45.21 |
| CDY14397 | Canola | nucleus | 42.67 | 45.07 |
| AT5G53210.1 | Thale cress | nucleus | 43.73 | 45.05 |
| CDY19692 | Canola | nucleus | 42.4 | 45.04 |
| Bra029088.1-P | Field mustard | nucleus | 38.13 | 42.56 |
| Bra022638.1-P | Field mustard | nucleus | 38.67 | 41.43 |
| CDX96201 | Canola | nucleus | 38.67 | 41.19 |
| Bra003073.1-P | Field mustard | nucleus | 39.47 | 34.18 |
| Zm00001d031260_P001 | Maize | nucleus | 17.6 | 30.56 |
| Zm00001d027987_P001 | Maize | nucleus | 21.07 | 23.87 |
| Zm00001d026046_P001 | Maize | nucleus | 21.33 | 23.81 |
| Zm00001d048229_P001 | Maize | nucleus | 22.4 | 23.53 |
| Zm00001d002492_P001 | Maize | mitochondrion | 10.93 | 23.3 |
| Zm00001d027419_P001 | Maize | nucleus | 18.13 | 21.86 |
| Zm00001d052192_P001 | Maize | nucleus | 19.73 | 21.45 |
| Zm00001d020790_P001 | Maize | nucleus | 18.93 | 21.39 |
| Zm00001d018119_P001 | Maize | nucleus | 20.0 | 21.31 |
| Zm00001d009715_P001 | Maize | nucleus | 23.73 | 21.29 |
| Zm00001d048478_P001 | Maize | nucleus | 18.13 | 20.99 |
| Zm00001d005939_P001 | Maize | nucleus | 18.13 | 20.42 |
| Zm00001d051509_P001 | Maize | nucleus | 17.87 | 20.18 |
| Zm00001d017677_P001 | Maize | nucleus | 17.87 | 18.31 |
Protein Annotations
| EntrezGene:100194372 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:AQK59364.1 | UniProt:B4FIG3 | EMBL:BT036901 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | EMBL:KJ726865 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF58 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00017B733C | EnsemblPlantsGene:Zm00001d053391 | EnsemblPlants:Zm00001d053391_P001 | EnsemblPlants:Zm00001d053391_T001 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
bHLH-transcription factor 24Transcription factor SPEECHLESS
Coordinates
chr4:+:228952679..228956244
Molecular Weight (calculated)
39428.7 Da
IEP (calculated)
8.964
GRAVY (calculated)
-0.325
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDGGMCELV IGDHRNLRHR LSGAEDLFSI VGTWEERTNG ASGGGGGGGG SSAAAVRAYS QGCTAGTAGA KTAAGTNNSR RRTGDEEKGG SAPAQKKHKG
101: SSAVSDDEGA AKMSHITVER NRRKQMNEHL AVLRSLMPCF YVKRGDQASI IGGVVDYIKE LQQVLRSLET KKHRKAYAEQ VLSPRPLPAV KSTPPLSPHV
201: AVPMSPRTPT PGSPYKPASG AAATTTGSCR LPHRAAAAAA AYIGTPTTSS SSSSYSHDQQ RHYSTYLPTL DSLVTELAAQ AAACSRPAAS GGLTRLPDVK
301: VEFAGPNLVL KTVSHRSPGQ ALKIIAALES LPLEILHVSV STVDDTMVHS FTIKIGIECE LSAEELVQEI QQTLL
101: SSAVSDDEGA AKMSHITVER NRRKQMNEHL AVLRSLMPCF YVKRGDQASI IGGVVDYIKE LQQVLRSLET KKHRKAYAEQ VLSPRPLPAV KSTPPLSPHV
201: AVPMSPRTPT PGSPYKPASG AAATTTGSCR LPHRAAAAAA AYIGTPTTSS SSSSYSHDQQ RHYSTYLPTL DSLVTELAAQ AAACSRPAAS GGLTRLPDVK
301: VEFAGPNLVL KTVSHRSPGQ ALKIIAALES LPLEILHVSV STVDDTMVHS FTIKIGIECE LSAEELVQEI QQTLL
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.