Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH53438 | Soybean | nucleus | 97.38 | 95.99 |
| KRH18131 | Soybean | nucleus | 76.16 | 77.98 |
| KRH16521 | Soybean | nucleus | 72.38 | 75.23 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 69.48 | 70.71 |
| Solyc03g007410.2.1 | Tomato | nucleus | 61.63 | 63.47 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 56.1 | 62.06 |
| CDY47059 | Canola | nucleus | 62.79 | 61.89 |
| PGSC0003DMT400023497 | Potato | nucleus | 63.66 | 61.69 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 50.29 | 61.13 |
| AT5G53210.1 | Thale cress | nucleus | 63.95 | 60.44 |
| CDY38734 | Canola | nucleus | 61.63 | 60.06 |
| CDY19692 | Canola | nucleus | 61.63 | 60.06 |
| CDY14397 | Canola | nucleus | 61.63 | 59.72 |
| GSMUA_Achr10P... | Banana | nucleus | 45.06 | 59.39 |
| KRH11385 | Soybean | cytosol | 32.27 | 58.12 |
| KRH20902 | Soybean | cytosol | 32.27 | 58.12 |
| Bra029088.1-P | Field mustard | nucleus | 56.69 | 58.04 |
| Bra022638.1-P | Field mustard | nucleus | 57.27 | 56.29 |
| CDX96201 | Canola | nucleus | 57.56 | 56.25 |
| TraesCS7A01G350900.1 | Wheat | nucleus | 52.03 | 49.18 |
| HORVU7Hr1G079250.1 | Barley | cytosol | 52.03 | 49.04 |
| TraesCS7D01G327900.1 | Wheat | nucleus | 51.74 | 48.9 |
| TraesCS7B01G232000.1 | Wheat | cytosol | 51.45 | 48.63 |
| Bra003073.1-P | Field mustard | nucleus | 57.85 | 45.96 |
| EER88428 | Sorghum | nucleus | 47.97 | 43.42 |
| Zm00001d046096_P001 | Maize | nucleus | 43.6 | 43.35 |
| EES06610 | Sorghum | nucleus | 49.42 | 42.71 |
| Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 46.22 | 42.4 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 47.38 | 41.27 |
| Os02t0257500-00 | Rice | nucleus | 48.84 | 40.48 |
| Zm00001d016095_P001 | Maize | nucleus | 46.22 | 40.46 |
| KRH62289 | Soybean | nucleus | 27.33 | 29.01 |
| KRH53000 | Soybean | nucleus | 27.62 | 28.44 |
| KRH16792 | Soybean | nucleus | 26.74 | 28.4 |
| KRH75598 | Soybean | nucleus | 24.13 | 27.39 |
| KRH45428 | Soybean | nucleus | 24.13 | 27.39 |
| KRH72411 | Soybean | nucleus | 27.03 | 26.88 |
| KRH75571 | Soybean | nucleus | 33.43 | 26.81 |
| KRG96858 | Soybean | nucleus | 25.58 | 26.51 |
| KRH68589 | Soybean | nucleus | 25.87 | 25.95 |
| KRH33976 | Soybean | nucleus | 25.0 | 25.9 |
| KRG92821 | Soybean | nucleus | 24.42 | 25.61 |
| KRH47774 | Soybean | nucleus | 28.2 | 25.26 |
| KRH71094 | Soybean | nucleus | 32.56 | 25.11 |
| KRH06347 | Soybean | nucleus | 28.49 | 24.62 |
Protein Annotations
| EntrezGene:100777437 | MapMan:15.5.32 | Gene3D:4.10.280.10 | EMBL:ACUP02002767 | EnsemblPlantsGene:GLYMA_04G238400 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | UniProt:I1JYV1 | InterPro:IPR011598 |
| InterPro:IPR036638 | EnsemblPlants:KRH64504 | ProteinID:KRH64504 | ProteinID:KRH64504.1 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF58 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000233A092 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:50691884..50696671
Molecular Weight (calculated)
37875.7 Da
IEP (calculated)
4.824
GRAVY (calculated)
-0.465
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSLCDIFD DKEFGSEHFG GDDLFAILES LESDFTDFPP PINEEAVVAA VSKDNNEDVS RLVSQKSTSS SAPLDSETEL ETSSKTKRQK LTPTTPEEAN
101: PDGQQKMSHI TVERNRRKQM NEHLTVLRSL MPCFYVKRGD QASIIGGVVD YISELQQVLQ ALEAKKQRKV YSEVLSPRLV SSPRPSPLSP RKPPLSPRLN
201: LPISPRTPQP GSPYRPRLQA QQGYNNIISP TMSNVSLDPS PTSSANSSIN DNINELVANS KSPTADVEVK FSGPHVLLKT VSQRIPGQAM KIITALEDLA
301: LEIVHVNINC AADDTMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: PDGQQKMSHI TVERNRRKQM NEHLTVLRSL MPCFYVKRGD QASIIGGVVD YISELQQVLQ ALEAKKQRKV YSEVLSPRLV SSPRPSPLSP RKPPLSPRLN
201: LPISPRTPQP GSPYRPRLQA QQGYNNIISP TMSNVSLDPS PTSSANSSIN DNINELVANS KSPTADVEVK FSGPHVLLKT VSQRIPGQAM KIITALEDLA
301: LEIVHVNINC AADDTMLNSF TIKIGIECQL SAEELAQQIQ QTFC
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.