Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 66.78 | 72.41 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 77.74 | 70.74 |
| GSMUA_Achr7P21110_001 | Banana | nucleus | 38.52 | 56.77 |
| GSMUA_Achr7P21190_001 | Banana | nucleus | 38.52 | 55.05 |
| KRH64504 | Soybean | nucleus | 61.13 | 50.29 |
| KRH53438 | Soybean | nucleus | 61.48 | 49.86 |
| KRH18131 | Soybean | nucleus | 58.66 | 49.4 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 58.66 | 49.11 |
| KRH16521 | Soybean | nucleus | 56.89 | 48.64 |
| CDY47059 | Canola | nucleus | 58.66 | 47.56 |
| Solyc03g007410.2.1 | Tomato | nucleus | 55.83 | 47.31 |
| AT5G53210.1 | Thale cress | nucleus | 60.78 | 47.25 |
| CDY19692 | Canola | nucleus | 58.66 | 47.03 |
| CDY14397 | Canola | nucleus | 58.3 | 46.48 |
| PGSC0003DMT400023497 | Potato | nucleus | 58.3 | 46.48 |
| CDY38734 | Canola | nucleus | 57.95 | 46.46 |
| Bra029088.1-P | Field mustard | nucleus | 51.94 | 43.75 |
| Bra022638.1-P | Field mustard | nucleus | 53.0 | 42.86 |
| CDX96201 | Canola | nucleus | 53.0 | 42.61 |
| TraesCS7A01G350900.1 | Wheat | nucleus | 54.77 | 42.58 |
| TraesCS7B01G232000.1 | Wheat | cytosol | 54.06 | 42.03 |
| Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 55.48 | 41.87 |
| TraesCS7D01G327900.1 | Wheat | nucleus | 53.71 | 41.76 |
| HORVU7Hr1G079250.1 | Barley | cytosol | 53.71 | 41.64 |
| GSMUA_Achr8P28400_001 | Banana | nucleus | 28.98 | 41.21 |
| EES06610 | Sorghum | nucleus | 54.77 | 38.94 |
| Zm00001d016095_P001 | Maize | nucleus | 54.06 | 38.93 |
| EER88428 | Sorghum | nucleus | 51.94 | 38.68 |
| Os02t0257500-00 | Rice | nucleus | 55.12 | 37.59 |
| Zm00001d046096_P001 | Maize | nucleus | 45.94 | 37.57 |
| GSMUA_Achr11P... | Banana | mitochondrion | 24.73 | 37.04 |
| GSMUA_Achr3P06660_001 | Banana | mitochondrion, nucleus | 23.32 | 35.48 |
| Bra003073.1-P | Field mustard | nucleus | 53.71 | 35.1 |
| GSMUA_Achr9P15000_001 | Banana | mitochondrion | 23.67 | 33.67 |
| GSMUA_Achr10P... | Banana | mitochondrion | 23.32 | 33.33 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 46.29 | 33.16 |
| GSMUA_Achr2P22310_001 | Banana | nucleus | 26.15 | 30.58 |
| GSMUA_Achr5P17900_001 | Banana | nucleus | 29.33 | 29.43 |
| GSMUA_Achr2P06030_001 | Banana | nucleus | 32.16 | 28.53 |
| GSMUA_Achr10P... | Banana | nucleus | 28.98 | 26.54 |
| GSMUA_Achr11P... | Banana | nucleus | 27.92 | 26.33 |
| GSMUA_Achr8P17650_001 | Banana | nucleus | 27.21 | 26.01 |
| GSMUA_Achr6P10290_001 | Banana | nucleus | 26.5 | 25.77 |
| GSMUA_Achr7P12790_001 | Banana | nucleus | 29.68 | 25.69 |
| GSMUA_Achr5P05450_001 | Banana | nucleus | 25.8 | 25.44 |
| GSMUA_Achr11P... | Banana | nucleus | 25.44 | 25.26 |
| GSMUA_Achr5P20300_001 | Banana | nucleus | 25.8 | 25.0 |
| GSMUA_Achr6P02150_001 | Banana | nucleus | 28.62 | 23.48 |
| GSMUA_Achr11P... | Banana | nucleus | 24.73 | 21.21 |
| GSMUA_Achr8P12330_001 | Banana | golgi, vacuole | 25.09 | 19.4 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P06780_001 | EnsemblPlants:GSMUA_Achr5T06780_001 | EnsemblPlantsGene:GSMUA_Achr5G06780_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF58 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002952B0D | UniProt:M0SWA7 | MapMan:15.5.32 | : |
Description
Putative Transcription factor SPEECHLESS [Source:GMGC_GENE;Acc:GSMUA_Achr5G06780_001]
Coordinates
chr5:-:4947957..4949232
Molecular Weight (calculated)
30867.6 Da
IEP (calculated)
5.241
GRAVY (calculated)
-0.310
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEDLTEVFG HAKLTQAELV GATSPEDLFS ILETFEDAIN VELRSVGSQG LAGPFEADED DEEAGQARKK QKVSDAAVAR DGQQKTSHIT VERNRRKQMN
101: DHLSVLRSLM PCFYVKRGDQ ASIIGGVVEY IKELQQVLQS LEAKKQRKAY GELLSPRPAS SPRSPYGPGM QRSYLSPTLV SSHESSSPLD SSSSELVANS
201: KSPVADVEVK FSGPNVILRT VSHRIPGQAL KIVAALEALA LEILHVRITT ADDTMLNSFT IKIGIECELS AEELAQKIQQ TFC
101: DHLSVLRSLM PCFYVKRGDQ ASIIGGVVEY IKELQQVLQS LEAKKQRKAY GELLSPRPAS SPRSPYGPGM QRSYLSPTLV SSHESSSPLD SSSSELVANS
201: KSPVADVEVK FSGPNVILRT VSHRIPGQAL KIVAALEALA LEILHVRITT ADDTMLNSFT IKIGIECELS AEELAQKIQQ TFC
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.