Factsheet for GSMUA_Achr6P10290_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 5
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	peroxisome
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P22310_001	Banana	nucleus	54.3	65.29
GSMUA_Achr10P...	Banana	mitochondrion	42.96	63.13
GSMUA_Achr3P06660_001	Banana	mitochondrion, nucleus	39.86	62.37
GSMUA_Achr9P15000_001	Banana	mitochondrion	41.58	60.8
GSMUA_Achr5P17900_001	Banana	nucleus	53.61	55.32
TraesCS4B01G304500.1	Wheat	nucleus	57.04	53.72
TraesCS4D01G302700.1	Wheat	nucleus	56.7	53.23
GSMUA_Achr10P...	Banana	nucleus	56.36	53.07
TraesCS4A01G404700.1	Wheat	nucleus	56.36	52.9
Os03t0188400-01	Rice	nucleus	59.79	52.89
GSMUA_Achr5P05450_001	Banana	nucleus	51.2	51.92
GSMUA_Achr11P...	Banana	mitochondrion	33.68	51.85
GSMUA_Achr8P17650_001	Banana	nucleus	51.89	51.01
GSMUA_Achr6P02150_001	Banana	nucleus	59.45	50.14
Zm00001d027987_P001	Maize	nucleus	56.7	49.85
VIT_07s0191g00240.t01	Wine grape	nucleus	54.98	49.69
GSMUA_Achr7P12790_001	Banana	nucleus	53.95	48.01
EER95359	Sorghum	nucleus	58.08	47.34
Solyc11g010340.1.1	Tomato	nucleus	48.45	47.32
Os10t0376900-01	Rice	nucleus	53.26	47.26
Zm00001d048229_P001	Maize	nucleus	56.01	45.66
OQU91887	Sorghum	nucleus	49.83	44.75
PGSC0003DMT400041644	Potato	nucleus	35.74	43.88
GSMUA_Achr11P...	Banana	nucleus	42.61	41.33
GSMUA_Achr8P28400_001	Banana	nucleus	26.8	39.2
CDY37820	Canola	nucleus	28.18	37.61
Bra031865.1-P	Field mustard	nucleus	27.49	36.7
HORVU4Hr1G078270.2	Barley	plastid	55.33	36.43
GSMUA_Achr7P21110_001	Banana	nucleus	23.71	35.94
AT5G65320.1	Thale cress	nucleus	36.43	35.81
GSMUA_Achr7P21190_001	Banana	nucleus	23.71	34.85
GSMUA_Achr5P20300_001	Banana	nucleus	34.36	34.25
CDY33966	Canola	nucleus	35.05	33.77
GSMUA_Achr2P06030_001	Banana	nucleus	34.02	31.03
GSMUA_Achr11P...	Banana	nucleus	30.24	30.88
GSMUA_Achr11P...	Banana	nucleus	33.33	29.39
GSMUA_Achr10P...	Banana	nucleus	25.09	27.97
GSMUA_Achr8P12330_001	Banana	golgi, vacuole	34.36	27.32
GSMUA_Achr5P06780_001	Banana	cytosol	25.77	26.5
GSMUA_Achr8P19870_001	Banana	cytosol, golgi, nucleus	26.12	24.44

Protein Annotations

EnsemblPlants:GSMUA_Achr6P10290_001	EnsemblPlants:GSMUA_Achr6T10290_001	EnsemblPlantsGene:GSMUA_Achr6G10290_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR11969	PANTHER:PTHR11969:SF24	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00029510AE	UniProt:M0T5S8	MapMan:15.5.32	:

Description

Putative Transcription factor bHLH96 [Source:GMGC_GENE;Acc:GSMUA_Achr6G10290_001]

Coordinates

chr6:+:6869749..6870865

Molecular Weight (calculated)

31809.8 Da

IEP (calculated)

8.782

GRAVY (calculated)

-0.372

Length

291 amino acids

Sequence
(BLAST)

001: MALEAVVFPQ DLFNYAFKEW CANTGSGGGA WEEKSMVLEC EMAGGGGGGG TWDPTCSSLA RNLQDWNVNS STPTAAGAPA GAGGRRKRRR TKSIKNKEEV
101: ESQRMTHIAV ERNRRRQMNE YLAVLRSLMP ASYVQRGDQA SIVAGAINYV KELEQLLQSL EVQKRVKQQA DAAGVAAAFA DFFSFPQYSS YSPSGGTTAG
201: DAAANIEVTM VDSHANLKVL TRRRPKQLLK LVAGLQSSRL LPLHLNVTSV DQMAMYSFSL KVEDDRHHTS VDEIAATVHQ MLGRIQEEAK L

Best Arabidopsis Sequence Match ( AT1G22490.1 )
(BLAST)

001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.