Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 65.8 | 73.46 |
| GSMUA_Achr3P06660_001 | Banana | mitochondrion, nucleus | 39.13 | 72.58 |
| GSMUA_Achr9P15000_001 | Banana | mitochondrion | 39.71 | 68.84 |
| GSMUA_Achr5P17900_001 | Banana | nucleus | 54.2 | 66.31 |
| GSMUA_Achr10P... | Banana | mitochondrion | 36.52 | 63.64 |
| GSMUA_Achr6P10290_001 | Banana | nucleus | 50.14 | 59.45 |
| GSMUA_Achr7P12790_001 | Banana | nucleus | 55.07 | 58.1 |
| GSMUA_Achr2P22310_001 | Banana | nucleus | 40.58 | 57.85 |
| GSMUA_Achr11P... | Banana | mitochondrion | 28.99 | 52.91 |
| GSMUA_Achr5P05450_001 | Banana | nucleus | 43.19 | 51.92 |
| VIT_07s0191g00240.t01 | Wine grape | nucleus | 48.12 | 51.55 |
| GSMUA_Achr8P17650_001 | Banana | nucleus | 43.48 | 50.68 |
| Solyc11g010340.1.1 | Tomato | nucleus | 43.77 | 50.67 |
| PGSC0003DMT400041644 | Potato | nucleus | 31.3 | 45.57 |
| GSMUA_Achr11P... | Banana | nucleus | 38.26 | 44.0 |
| GSMUA_Achr8P28400_001 | Banana | nucleus | 22.9 | 39.7 |
| GSMUA_Achr7P21110_001 | Banana | nucleus | 21.74 | 39.06 |
| CDY37820 | Canola | nucleus | 24.35 | 38.53 |
| Bra031865.1-P | Field mustard | nucleus | 24.06 | 38.07 |
| GSMUA_Achr7P21190_001 | Banana | nucleus | 21.74 | 37.88 |
| AT5G65320.1 | Thale cress | nucleus | 31.88 | 37.16 |
| CDY33966 | Canola | nucleus | 30.72 | 35.1 |
| GSMUA_Achr5P20300_001 | Banana | nucleus | 28.41 | 33.56 |
| GSMUA_Achr11P... | Banana | nucleus | 27.25 | 32.98 |
| GSMUA_Achr2P06030_001 | Banana | nucleus | 29.86 | 32.29 |
| GSMUA_Achr11P... | Banana | nucleus | 28.99 | 30.3 |
| GSMUA_Achr10P... | Banana | nucleus | 22.32 | 29.5 |
| GSMUA_Achr8P12330_001 | Banana | golgi, vacuole | 30.43 | 28.69 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 23.48 | 28.62 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 25.22 | 27.97 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P02150_001 | EnsemblPlants:GSMUA_Achr6T02150_001 | EnsemblPlantsGene:GSMUA_Achr6G02150_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR11969 | PANTHER:PTHR11969:SF26 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SUPFAM:SSF47459 |
| UniParc:UPI000296B97E | UniProt:M0T3G3 | MapMan:15.5.32 | : | : | : |
Description
Putative Transcription factor bHLH94 [Source:GMGC_GENE;Acc:GSMUA_Achr6G02150_001]
Coordinates
chr6:-:1380956..1382233
Molecular Weight (calculated)
37942.5 Da
IEP (calculated)
6.513
GRAVY (calculated)
-0.132
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEAVALPQ DLFGCAMNEL YNMGGAAWCY AFGDEGEEKG VALDCKISGG GGGGVHGNLD VSSGASSSLL ETAAKDGALV IGREATAGGR KRRRTKVFKN
101: QEEVENQRMT HIAVERNRRK QMNEYLAVLQ SLMPASYVQR LPLCVFVCAT FLISLRLMSS LWRIVFRASN SICIHIWSSF RGDQASIIGG AINFVKELEQ
201: LVQSLEARKR VEKRMDAAPF ADFFTFPQYS TTGSRSANND CADEGATENR PAVADIEVTM VESHANLKVL SRRRPKQLLK MVLGLQNLRL TTLHLNVTSI
301: AEMAFYSFSL KVEDDCQLTS VDEIATAVHQ MVGTIQEDAD RDSNL
101: QEEVENQRMT HIAVERNRRK QMNEYLAVLQ SLMPASYVQR LPLCVFVCAT FLISLRLMSS LWRIVFRASN SICIHIWSSF RGDQASIIGG AINFVKELEQ
201: LVQSLEARKR VEKRMDAAPF ADFFTFPQYS TTGSRSANND CADEGATENR PAVADIEVTM VESHANLKVL SRRRPKQLLK MVLGLQNLRL TTLHLNVTSI
301: AEMAFYSFSL KVEDDCQLTS VDEIATAVHQ MVGTIQEDAD RDSNL
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.