Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 64.04 | 65.61 |
| GSMUA_Achr11P... | Banana | nucleus | 67.47 | 59.7 |
| GSMUA_Achr8P12330_001 | Banana | golgi, vacuole | 62.67 | 50.0 |
| GSMUA_Achr11P... | Banana | mitochondrion | 29.79 | 46.03 |
| GSMUA_Achr3P06660_001 | Banana | mitochondrion, nucleus | 29.11 | 45.7 |
| GSMUA_Achr9P15000_001 | Banana | mitochondrion | 30.48 | 44.72 |
| GSMUA_Achr10P... | Banana | mitochondrion | 29.79 | 43.94 |
| Os03t0122100-00 | Rice | mitochondrion, nucleus, plastid | 44.52 | 41.8 |
| Zm00001d027419_P001 | Maize | nucleus | 43.84 | 41.16 |
| TraesCS4B01G347100.1 | Wheat | extracellular | 42.12 | 41.0 |
| OQU93358 | Sorghum | nucleus | 45.21 | 40.87 |
| TraesCS5A01G515800.1 | Wheat | extracellular | 42.12 | 40.59 |
| HORVU4Hr1G084850.2 | Barley | extracellular | 41.78 | 40.26 |
| TraesCS4D01G342000.1 | Wheat | extracellular | 41.78 | 40.26 |
| Zm00001d048478_P001 | Maize | nucleus | 43.84 | 39.51 |
| GSMUA_Achr8P28400_001 | Banana | nucleus | 26.71 | 39.2 |
| CDY51710 | Canola | nucleus | 40.07 | 37.62 |
| Bra037414.1-P | Field mustard | nucleus | 40.07 | 37.62 |
| GSMUA_Achr2P22310_001 | Banana | nucleus | 31.16 | 37.6 |
| CDY07143 | Canola | nucleus | 39.38 | 37.1 |
| GSMUA_Achr7P21110_001 | Banana | nucleus | 24.32 | 36.98 |
| VIT_15s0048g02510.t01 | Wine grape | nucleus | 45.55 | 36.84 |
| CDY11386 | Canola | nucleus | 34.93 | 36.56 |
| AT4G01460.2 | Thale cress | nucleus | 39.38 | 36.51 |
| GSMUA_Achr7P21190_001 | Banana | nucleus | 24.32 | 35.86 |
| Bra007644.1-P | Field mustard | nucleus | 34.25 | 35.84 |
| Bra004505.1-P | Field mustard | nucleus | 33.22 | 35.79 |
| CDY27521 | Canola | nucleus | 37.33 | 35.16 |
| GSMUA_Achr5P17900_001 | Banana | nucleus | 33.9 | 35.11 |
| GSMUA_Achr6P10290_001 | Banana | nucleus | 34.25 | 34.36 |
| KRH47774 | Soybean | nucleus | 44.86 | 34.11 |
| CDY48013 | Canola | nucleus | 36.64 | 33.65 |
| Bra040483.1-P | Field mustard | nucleus | 36.64 | 33.65 |
| GSMUA_Achr5P05450_001 | Banana | nucleus | 32.19 | 32.75 |
| KRH06347 | Soybean | nucleus | 44.52 | 32.66 |
| GSMUA_Achr11P... | Banana | nucleus | 33.22 | 32.33 |
| CDX76598 | Canola | nucleus | 34.59 | 32.06 |
| CDY41561 | Canola | nucleus | 33.56 | 31.41 |
| GSMUA_Achr10P... | Banana | nucleus | 32.88 | 31.07 |
| GSMUA_Achr8P17650_001 | Banana | nucleus | 31.16 | 30.74 |
| AT2G46810.1 | Thale cress | nucleus | 39.04 | 30.73 |
| CDX80049 | Canola | nucleus | 32.88 | 30.67 |
| CDY68483 | Canola | nucleus | 33.56 | 30.62 |
| CDY55926 | Canola | nucleus | 33.22 | 30.03 |
| GSMUA_Achr7P12790_001 | Banana | nucleus | 33.56 | 29.97 |
| AT3G61950.1 | Thale cress | nucleus | 35.62 | 29.05 |
| GSMUA_Achr2P06030_001 | Banana | nucleus | 31.51 | 28.84 |
| GSMUA_Achr6P02150_001 | Banana | nucleus | 33.56 | 28.41 |
| CDY55929 | Canola | nucleus | 31.85 | 27.84 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 25.0 | 25.8 |
| GSMUA_Achr10P... | Banana | nucleus | 22.95 | 25.67 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 26.03 | 24.44 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P20300_001 | EnsemblPlants:GSMUA_Achr5T20300_001 | EnsemblPlantsGene:GSMUA_Achr5G20300_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR11969 | PANTHER:PTHR11969:SF29 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002950A48 | UniProt:M0T059 | MapMan:15.5.32 | : | : |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_48.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr5G20300_001]
Coordinates
chr5:-:22063170..22064359
Molecular Weight (calculated)
32398.7 Da
IEP (calculated)
7.057
GRAVY (calculated)
-0.334
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCGSLFSRQ MPFLQLLQGA MQAEEEMMDS SPAAEQLESC ITHLSESETR TVVHELPTMA ATTGLIVRSA AATCSGERKK RMRRRPASAS KSAEKEESQR
101: MTHIAVERNR RRVMNYHLAT LRSLMPHSFV QRGDQASIVG GAIEFVKELE QHLISLRAQK RLQASVSVSS RSDDNDKCSA PALHDGFFTS SQYMGYSQSQ
201: EEDATAVDVE ATLVQGHVNL KVAAQRRRGQ LVRAMAAIEE LRLSILHLNI TTLEPPSILY SINLKMEEEC KLGTADEVAT AVHQIFSYIN TS
101: MTHIAVERNR RRVMNYHLAT LRSLMPHSFV QRGDQASIVG GAIEFVKELE QHLISLRAQK RLQASVSVSS RSDDNDKCSA PALHDGFFTS SQYMGYSQSQ
201: EEDATAVDVE ATLVQGHVNL KVAAQRRRGQ LVRAMAAIEE LRLSILHLNI TTLEPPSILY SINLKMEEEC KLGTADEVAT AVHQIFSYIN TS
001: MLQQSEDPSP FLSFKDPSFL ALLSLQTLEK PWELENYLPH EVPEFHSPIH SETNHYYHNP SLEGVNEAIS NQELPFNPLE NARSRRKRKN NNLASLMTRE
101: KRKRRRTKPT KNIEEIESQR MTHIAVERNR RRQMNVHLNS LRSIIPSSYI QRGDQASIVG GAIDFVKILE QQLQSLEAQK RSQQSDDNKE QIPEDNSLRN
201: ISSNKLRASN KEEQSSKLKI EATVIESHVN LKIQCTRKQG QLLRSIILLE KLRFTVLHLN ITSPTNTSVS YSFNLKMEDE CNLGSADEIT AAIRQIFDS
101: KRKRRRTKPT KNIEEIESQR MTHIAVERNR RRQMNVHLNS LRSIIPSSYI QRGDQASIVG GAIDFVKILE QQLQSLEAQK RSQQSDDNKE QIPEDNSLRN
201: ISSNKLRASN KEEQSSKLKI EATVIESHVN LKIQCTRKQG QLLRSIILLE KLRFTVLHLN ITSPTNTSVS YSFNLKMEDE CNLGSADEIT AAIRQIFDS
Arabidopsis Description
BHLH70Transcription factor bHLH70 [Source:UniProtKB/Swiss-Prot;Acc:O81037]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.