Factsheet for GSMUA_Achr10P19180_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	57.07	59.79
GSMUA_Achr3P06660_001	Banana	mitochondrion, nucleus	56.06	59.68
GSMUA_Achr9P15000_001	Banana	mitochondrion	59.6	59.3
GSMUA_Achr2P22310_001	Banana	nucleus	62.12	50.83
GSMUA_Achr6P10290_001	Banana	nucleus	63.13	42.96
GSMUA_Achr8P28400_001	Banana	nucleus	39.9	39.7
GSMUA_Achr8P17650_001	Banana	nucleus	58.08	38.85
GSMUA_Achr5P17900_001	Banana	nucleus	55.05	38.65
GSMUA_Achr7P21110_001	Banana	nucleus	36.87	38.02
GSMUA_Achr5P05450_001	Banana	nucleus	54.55	37.63
GSMUA_Achr10P...	Banana	nucleus	58.08	37.22
GSMUA_Achr11P...	Banana	nucleus	56.06	37.0
Solyc11g010340.1.1	Tomato	nucleus	55.56	36.91
GSMUA_Achr7P21190_001	Banana	nucleus	36.87	36.87
TraesCS4B01G304500.1	Wheat	nucleus	57.07	36.57
GSMUA_Achr6P02150_001	Banana	nucleus	63.64	36.52
TraesCS4D01G302700.1	Wheat	nucleus	57.07	36.45
Os03t0188400-01	Rice	nucleus	60.1	36.17
TraesCS4A01G404700.1	Wheat	nucleus	56.06	35.81
GSMUA_Achr7P12790_001	Banana	nucleus	56.57	34.25
Zm00001d027987_P001	Maize	nucleus	57.07	34.14
VIT_07s0191g00240.t01	Wine grape	nucleus	55.05	33.85
OQU91887	Sorghum	nucleus	54.55	33.33
Os10t0376900-01	Rice	nucleus	54.55	32.93
EER95359	Sorghum	nucleus	59.09	32.77
Zm00001d048229_P001	Maize	nucleus	56.06	31.09
GSMUA_Achr11P...	Banana	nucleus	44.44	30.88
GSMUA_Achr5P20300_001	Banana	nucleus	43.94	29.79
PGSC0003DMT400041644	Potato	nucleus	34.85	29.11
CDY37820	Canola	nucleus	30.81	27.98
Bra031865.1-P	Field mustard	nucleus	29.8	27.06
GSMUA_Achr11P...	Banana	nucleus	44.95	26.97
GSMUA_Achr2P06030_001	Banana	nucleus	42.93	26.65
AT5G65320.1	Thale cress	nucleus	39.39	26.35
CDY33966	Canola	nucleus	38.89	25.5
GSMUA_Achr8P12330_001	Banana	golgi, vacuole	45.45	24.59
GSMUA_Achr10P...	Banana	nucleus	32.32	24.52
HORVU4Hr1G078270.2	Barley	plastid	54.55	24.43
GSMUA_Achr5P06780_001	Banana	cytosol	33.33	23.32
GSMUA_Achr8P19870_001	Banana	cytosol, golgi, nucleus	33.84	21.54

Protein Annotations

EnsemblPlants:GSMUA_Achr10P19180_001	EnsemblPlants:GSMUA_Achr10T19180_001	EnsemblPlantsGene:GSMUA_Achr10G19180_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR11969	PANTHER:PTHR11969:SF24	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00029604C0	UniProt:M0RJJ3	MapMan:15.5.32	:

Description

Transcription factor bHLH96 [Source:GMGC_GENE;Acc:GSMUA_Achr10G19180_001]

Coordinates

chr10:-:25668768..25669654

Molecular Weight (calculated)

21981.2 Da

IEP (calculated)

7.671

GRAVY (calculated)

-0.353

Length

198 amino acids

Sequence
(BLAST)

001: MTHIAVERNR RRQMNEYLAV LRSLMPSSFV QRGDQASIVG GAINYVKELE QLLRSLELRK RLEQRAANGG ATDSSSSSSS SNNDKKNHGV TGADTAFGNS
101: GEVENRAATA NIEVTVVESH ASLKVLSRRR PKQLVKLVVG LQSLRLMPLH LNVTSLDQMV LYAFSLKVED DCQHTSVDEI ATAVHQMLCR IEEEETYL

Best Arabidopsis Sequence Match ( AT1G22490.1 )
(BLAST)

001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.