Factsheet for TraesCS4B01G304500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G404700.1	Wheat	nucleus	97.73	97.42
TraesCS4D01G302700.1	Wheat	nucleus	97.09	96.77
HORVU4Hr1G078270.2	Barley	plastid	94.82	66.29
Os03t0188400-01	Rice	nucleus	70.23	65.96
Zm00001d027987_P001	Maize	nucleus	64.72	60.42
EER95359	Sorghum	nucleus	68.93	59.66
Zm00001d048229_P001	Maize	nucleus	66.34	57.42
GSMUA_Achr10P...	Banana	mitochondrion	36.57	57.07
GSMUA_Achr6P10290_001	Banana	nucleus	53.72	57.04
GSMUA_Achr2P22310_001	Banana	nucleus	44.34	56.61
Solyc11g010340.1.1	Tomato	nucleus	45.95	47.65
VIT_07s0191g00240.t01	Wine grape	nucleus	48.87	46.89
TraesCS6B01G366200.1	Wheat	nucleus	52.1	46.53
TraesCS5B01G245900.1	Wheat	nucleus	50.49	45.35
TraesCS6B01G346100.1	Wheat	nucleus	46.6	45.14
PGSC0003DMT400041644	Potato	nucleus	33.33	43.46
TraesCS2B01G469800.1	Wheat	nucleus	42.39	40.06
TraesCS2B01G469700.1	Wheat	nucleus	42.39	40.06
TraesCS6B01G291200.1	Wheat	nucleus	42.72	39.29
CDY37820	Canola	nucleus	26.54	37.61
Bra031865.1-P	Field mustard	nucleus	25.89	36.7
CDY33966	Canola	nucleus	33.01	33.77
AT5G65320.1	Thale cress	nucleus	32.04	33.45
TraesCS2B01G141600.1	Wheat	plastid	24.27	31.51
TraesCS4B01G347100.1	Wheat	extracellular	29.77	30.67
TraesCS1B01G300100.1	Wheat	nucleus	32.36	23.98
TraesCS7B01G232000.1	Wheat	cytosol	22.65	19.23

Protein Annotations

EnsemblPlants:TraesCS4B01G304500.1	EnsemblPlantsGene:TraesCS4B01G304500	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11969	PANTHER:PTHR11969:SF24	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr4B:+:592819382..592821863

Molecular Weight (calculated)

33594.7 Da

IEP (calculated)

7.064

GRAVY (calculated)

-0.397

Length

309 amino acids

Sequence
(BLAST)

001: MALEAVVFAQ GHFGYGQAPG LAPWCDMVGA GGFLEDWDQQ LLAAPVPPNA EDQWEPVSSW DQSEASSEGK AAAPEPAMAA AATGRRKRRR TKIVKNKEEV
101: ESQRRTHIAV ERNRRRQMNE YLAALRSLMP QSYAQRGDQA SIVGGAINYV KELEQLLQSL EVQKSVKNRI GRSPFASSFT FPQYSTSCNT TQATASDGGS
201: GADSSGVKSE AGVADIEVTM VEGHASLKVL SRRRPKQLLR LVAGLQQLRI PPLHLNVTTV DAMVLYSFSL KVEDGSKLSS VEDIAAAVHE ILARIQREEE
301: EAGRLSSSS

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.