Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G289400.1 | Wheat | nucleus | 98.56 | 98.09 |
| TraesCS1A01G290800.1 | Wheat | nucleus | 98.08 | 97.38 |
| HORVU1Hr1G071330.3 | Barley | nucleus | 95.44 | 91.28 |
| Os05t0586300-00 | Rice | nucleus | 65.95 | 71.06 |
| Zm00001d009715_P001 | Maize | nucleus | 64.03 | 63.88 |
| GSMUA_Achr8P28400_001 | Banana | nucleus | 30.46 | 63.82 |
| GSMUA_Achr2P06030_001 | Banana | nucleus | 47.48 | 62.07 |
| KXG22636 | Sorghum | nucleus | 64.03 | 58.42 |
| Solyc09g091760.1.1 | Tomato | nucleus | 31.65 | 53.44 |
| VIT_05s0029g00050.t01 | Wine grape | nucleus | 48.68 | 51.13 |
| Solyc05g053660.1.1 | Tomato | nucleus | 45.08 | 49.09 |
| Bra028357.1-P | Field mustard | nucleus | 46.52 | 48.5 |
| PGSC0003DMT400040761 | Potato | nucleus | 44.84 | 47.95 |
| Bra001929.1-P | Field mustard | nucleus | 46.52 | 47.9 |
| CDX92996 | Canola | nucleus | 46.52 | 47.9 |
| CDX94841 | Canola | nucleus | 46.28 | 47.3 |
| CDX85167 | Canola | nucleus | 43.65 | 46.79 |
| PGSC0003DMT400076223 | Potato | nucleus | 31.89 | 46.67 |
| AT3G24140.1 | Thale cress | nucleus | 46.28 | 46.62 |
| KRH75571 | Soybean | nucleus | 47.24 | 45.92 |
| CDX77460 | Canola | nucleus | 38.61 | 45.22 |
| KRH71094 | Soybean | nucleus | 47.48 | 44.39 |
| Bra028351.1-P | Field mustard | nucleus | 37.41 | 43.33 |
| CDY18083 | Canola | nucleus | 38.13 | 41.41 |
| CDY64587 | Canola | nucleus | 36.21 | 40.7 |
| TraesCS2B01G141600.1 | Wheat | plastid | 21.1 | 36.97 |
| TraesCS4B01G304500.1 | Wheat | nucleus | 23.98 | 32.36 |
| TraesCS2B01G469700.1 | Wheat | nucleus | 23.98 | 30.58 |
| TraesCS2B01G469800.1 | Wheat | nucleus | 23.98 | 30.58 |
| TraesCS6B01G346100.1 | Wheat | nucleus | 22.78 | 29.78 |
| TraesCS6B01G291200.1 | Wheat | nucleus | 23.98 | 29.76 |
| TraesCS6B01G366200.1 | Wheat | nucleus | 23.5 | 28.32 |
| TraesCS5B01G245900.1 | Wheat | nucleus | 23.26 | 28.2 |
| TraesCS7B01G232000.1 | Wheat | cytosol | 22.54 | 25.82 |
| TraesCS4B01G347100.1 | Wheat | extracellular | 17.99 | 25.0 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006464 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0010052 | GO:GO:0010377 | GO:GO:0010444 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0030154 |
| GO:GO:0045597 | GO:GO:0045893 | GO:GO:0046983 | GO:GO:0051782 | GO:GO:0061086 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11969 | PANTHER:PTHR11969:SF46 |
| SMART:SM00353 | SUPFAM:SSF47459 | EnsemblPlantsGene:TraesCS1B01G300100 | EnsemblPlants:TraesCS1B01G300100.1 | InterPro:bHLH_dom | TIGR:cd00083 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:520812854..520815642
Molecular Weight (calculated)
44970.5 Da
IEP (calculated)
4.949
GRAVY (calculated)
-0.531
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKQGSSHQL DTFAQLDGGA APEEPIGGGA GAEMVDYMLG QTTPLPPGGP HGQVSLDKLS FSDVLQFADF GPRLALNQPS ADHDDARDDD EEDSYFFRFQ
101: SQLSGSDDPD PRGGAGIHHA AEHEGSKTAD GSGGPHDHGG GVSESTTLVQ QSDGGGRVGQ KAGGEQAKSG RRKRPRSTKT SEEVESQRMT HIAVERNRRR
201: QMNDYLRVLR SLMPGSYVQR GDQASIIGGA IEFIRELEQL IQCLESQKRR RLYGDTPRPV ADASAPVVPA TSIHEPPPQG HEAPPFYVSP SLSFPAAGNG
301: DGAAGAKVMI DLDTCGGGLR EEVAENKSSL ADIEVRVLGE DAVIKVLSRR RPEQLIKTIA VLEEMHMSIL HTNITTIEQT VLYSFNVKIT SEPRFTAEEI
401: VGAVHQILSF IDVNYTL
101: SQLSGSDDPD PRGGAGIHHA AEHEGSKTAD GSGGPHDHGG GVSESTTLVQ QSDGGGRVGQ KAGGEQAKSG RRKRPRSTKT SEEVESQRMT HIAVERNRRR
201: QMNDYLRVLR SLMPGSYVQR GDQASIIGGA IEFIRELEQL IQCLESQKRR RLYGDTPRPV ADASAPVVPA TSIHEPPPQG HEAPPFYVSP SLSFPAAGNG
301: DGAAGAKVMI DLDTCGGGLR EEVAENKSSL ADIEVRVLGE DAVIKVLSRR RPEQLIKTIA VLEEMHMSIL HTNITTIEQT VLYSFNVKIT SEPRFTAEEI
401: VGAVHQILSF IDVNYTL
001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NM
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NM
Arabidopsis Description
FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.