Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G230500.1 | Wheat | nucleus | 98.52 | 99.1 |
| TraesCS5B01G229000.1 | Wheat | nucleus | 96.14 | 97.01 |
| HORVU5Hr1G066530.2 | Barley | cytosol, nucleus | 91.99 | 84.47 |
| Zm00001d005740_P001 | Maize | nucleus | 73.59 | 71.26 |
| EER98886 | Sorghum | nucleus | 74.48 | 71.1 |
| Os09t0410700-00 | Rice | nucleus | 75.07 | 69.7 |
| GSMUA_Achr6P30610_001 | Banana | nucleus | 35.31 | 62.3 |
| GSMUA_Achr7P07280_001 | Banana | nucleus | 34.72 | 60.62 |
| Solyc04g006990.2.1 | Tomato | nucleus | 35.01 | 55.92 |
| Bra025158.1-P | Field mustard | nucleus | 34.42 | 52.02 |
| PGSC0003DMT400019294 | Potato | nucleus | 37.09 | 47.89 |
| Solyc05g009880.2.1 | Tomato | nucleus | 40.95 | 46.0 |
| PGSC0003DMT400002155 | Potato | nucleus | 40.36 | 43.59 |
| VIT_01s0011g02940.t01 | Wine grape | nucleus | 44.51 | 42.98 |
| KRH70619 | Soybean | nucleus | 43.32 | 39.25 |
| KRG92013 | Soybean | nucleus | 39.76 | 38.62 |
| CDX99756 | Canola | nucleus | 37.98 | 38.44 |
| CDX95989 | Canola | nucleus | 40.06 | 38.24 |
| CDY13580 | Canola | nucleus | 37.98 | 38.21 |
| CDY33592 | Canola | nucleus | 40.06 | 38.14 |
| Bra004338.1-P | Field mustard | nucleus | 40.06 | 38.14 |
| AT1G68810.1 | Thale cress | nucleus | 41.54 | 38.04 |
| KRH75497 | Soybean | nucleus | 42.43 | 38.03 |
| KRH34774 | Soybean | nucleus | 39.76 | 37.96 |
| CDY07364 | Canola | nucleus | 39.76 | 37.96 |
| Bra004015.1-P | Field mustard | nucleus | 39.76 | 37.96 |
| CDX83546 | Canola | nucleus | 37.69 | 37.91 |
| Bra026510.1-P | Field mustard | nucleus | 37.69 | 37.91 |
| TraesCS5D01G252300.1 | Wheat | nucleus | 23.44 | 37.8 |
| CDY04259 | Canola | nucleus | 38.87 | 37.01 |
| AT3G25710.1 | Thale cress | nucleus | 37.69 | 36.92 |
| TraesCS4D01G217700.1 | Wheat | nucleus | 43.32 | 35.96 |
| TraesCS2D01G472000.1 | Wheat | nucleus | 23.15 | 35.94 |
| TraesCS5D01G479100.1 | Wheat | nucleus | 26.11 | 35.06 |
| TraesCS3D01G144700.1 | Wheat | nucleus | 26.11 | 34.51 |
| TraesCS3D01G104800.1 | Wheat | cytosol | 16.91 | 32.76 |
| TraesCS1D01G112000.1 | Wheat | plastid | 18.69 | 29.86 |
| TraesCS3D01G105100.2 | Wheat | mitochondrion, nucleus | 21.96 | 26.43 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G237300.1 | EnsemblPlantsGene:TraesCS5D01G237300 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF98 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| SUPFAM:SSF55021 | TIGR:cd00083 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr5D:-:345846445..345848708
Molecular Weight (calculated)
34977.2 Da
IEP (calculated)
5.268
GRAVY (calculated)
-0.243
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MWEGGVHGSH QDAARLLPPW LGGGPAAFAD PVGAAVGAGF GGYACDVVGQ AGGVFGFGFE AAVVAAQQQH QQQRAAEAAA AAAGGSKAVV SGLLGSLQAE
101: LGRMNAGEIM DAKALAASRS HSEAERRRRQ RINGHLARLR SLLPNTTKTD KASLLAEVLE HVKELKRQTS AMTMMAAAVG GDEDDDAAPV QMLPTEADEL
201: GVDAAEDGEG RLVVRASLCC EDRPDLIPDI IRALAALRLR AHRAEITTLG GRVRSVLLIT AEEGEEGADE GGDGIDEECV ASHRRHECIA SVQEALRGVM
301: DRRAACSNDT SSSGGGGGGG SIKRQRMNYG AHEQCSV
101: LGRMNAGEIM DAKALAASRS HSEAERRRRQ RINGHLARLR SLLPNTTKTD KASLLAEVLE HVKELKRQTS AMTMMAAAVG GDEDDDAAPV QMLPTEADEL
201: GVDAAEDGEG RLVVRASLCC EDRPDLIPDI IRALAALRLR AHRAEITTLG GRVRSVLLIT AEEGEEGADE GGDGIDEECV ASHRRHECIA SVQEALRGVM
301: DRRAACSNDT SSSGGGGGGG SIKRQRMNYG AHEQCSV
001: MYAMKEEDCL QTFHNLQDYQ DQFHLHHHPQ ILPWSSTSLP SFDPLHFPSN PTRYSDPVHY FNRRASSSSS SFDYNDGFVS PPPSMDHPQN HLRILSEALG
101: PIMRRGSSFG FDGEIMGKLS AQEVMDAKAL AASKSHSEAE RRRRERINTH LAKLRSILPN TTKTDKASLL AEVIQHMKEL KRQTSQITDT YQVPTECDDL
201: TVDSSYNDEE GNLVIRASFC CQDRTDLMHD VINALKSLRL RTLKAEIATV GGRVKNILFL SREYDDEEDH DSYRRNFDGD DVEDYDEERM MNNRVSSIEE
301: ALKAVIEKCV HNNDESNDNN NLEKSSSGGI KRQRTSKMVN RCYN
101: PIMRRGSSFG FDGEIMGKLS AQEVMDAKAL AASKSHSEAE RRRRERINTH LAKLRSILPN TTKTDKASLL AEVIQHMKEL KRQTSQITDT YQVPTECDDL
201: TVDSSYNDEE GNLVIRASFC CQDRTDLMHD VINALKSLRL RTLKAEIATV GGRVKNILFL SREYDDEEDH DSYRRNFDGD DVEDYDEERM MNNRVSSIEE
301: ALKAVIEKCV HNNDESNDNN NLEKSSSGGI KRQRTSKMVN RCYN
Arabidopsis Description
BHLH32Transcription factor AIG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS08]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.