Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010432.1-P | |
| Bra026415.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68810.1 | Bra010432.1-P | AT4G26630.1 | 25387881 |
| AT1G68810.1 | Bra026415.1-P | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07364 | Canola | nucleus | 100.0 | 100.0 |
| CDY04259 | Canola | nucleus | 96.6 | 96.33 |
| Bra004338.1-P | Field mustard | nucleus | 86.69 | 86.44 |
| AT1G68810.1 | Thale cress | nucleus | 88.1 | 84.51 |
| Solyc04g006990.2.1 | Tomato | nucleus | 39.09 | 65.4 |
| GSMUA_Achr6P30610_001 | Banana | nucleus | 34.56 | 63.87 |
| GSMUA_Achr1P21280_001 | Banana | nucleus | 33.71 | 59.8 |
| Bra025158.1-P | Field mustard | nucleus | 37.68 | 59.64 |
| GSMUA_Achr11P... | Banana | nucleus | 33.43 | 59.3 |
| GSMUA_Achr7P07280_001 | Banana | nucleus | 32.29 | 59.07 |
| VIT_01s0011g02940.t01 | Wine grape | nucleus | 57.51 | 58.17 |
| Solyc05g009880.2.1 | Tomato | nucleus | 49.29 | 58.0 |
| PGSC0003DMT400002155 | Potato | nucleus | 49.86 | 56.41 |
| PGSC0003DMT400019294 | Potato | nucleus | 41.64 | 56.32 |
| KRG92013 | Soybean | nucleus | 53.26 | 54.18 |
| KRH34774 | Soybean | nucleus | 54.11 | 54.11 |
| KRH70619 | Soybean | nucleus | 53.26 | 50.54 |
| KRH75497 | Soybean | nucleus | 53.26 | 50.0 |
| Bra026510.1-P | Field mustard | nucleus | 44.19 | 46.57 |
| TraesCS5B01G229000.1 | Wheat | nucleus | 37.96 | 40.12 |
| TraesCS5D01G237300.1 | Wheat | nucleus | 37.96 | 39.76 |
| TraesCS5A01G230500.1 | Wheat | nucleus | 37.68 | 39.7 |
| HORVU4Hr1G061760.1 | Barley | nucleus | 45.04 | 39.55 |
| TraesCS4D01G217700.1 | Wheat | nucleus | 45.04 | 39.16 |
| Os03t0260600-01 | Rice | nucleus | 45.04 | 38.88 |
| Os08t0432800-01 | Rice | nucleus | 37.96 | 38.84 |
| TraesCS4B01G217400.1 | Wheat | nucleus | 44.48 | 38.67 |
| TraesCS4A01G087000.1 | Wheat | nucleus | 44.48 | 38.67 |
| Zm00001d028504_P001 | Maize | nucleus | 41.64 | 37.6 |
| HORVU5Hr1G066530.2 | Barley | cytosol, nucleus | 38.81 | 37.33 |
| Zm00001d032213_P001 | Maize | nucleus | 37.11 | 37.11 |
| Zm00001d050394_P001 | Maize | nucleus | 38.53 | 36.76 |
| Bra016951.1-P | Field mustard | nucleus | 26.06 | 36.22 |
| Os09t0410700-00 | Rice | nucleus | 37.11 | 36.09 |
| Bra004599.1-P | Field mustard | nucleus | 25.5 | 36.0 |
| Zm00001d005740_P001 | Maize | nucleus | 35.41 | 35.92 |
| EER98886 | Sorghum | nucleus | 35.69 | 35.69 |
| OQU92884 | Sorghum | nucleus | 44.48 | 35.28 |
| Bra014672.1-P | Field mustard | nucleus | 22.95 | 34.91 |
| EES15038 | Sorghum | nucleus | 38.53 | 34.69 |
| Zm00001d047878_P001 | Maize | nucleus | 41.36 | 34.19 |
| Bra017024.1-P | Field mustard | nucleus, plastid | 20.96 | 29.25 |
| Bra000177.1-P | Field mustard | nucleus | 18.41 | 27.9 |
| Bra010635.1-P | Field mustard | plastid | 17.0 | 26.79 |
Protein Annotations
| EnsemblPlants:Bra004015.1 | EnsemblPlants:Bra004015.1-P | EnsemblPlantsGene:Bra004015 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF77 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI00025419E3 | UniProt:M4CII1 | MapMan:15.5.32 | : | : |
Description
AT1G68810 (E=5e-136) | basic helix-loop-helix (bHLH) family protein
Coordinates
chrA07:-:16318004..16319588
Molecular Weight (calculated)
39211.1 Da
IEP (calculated)
6.265
GRAVY (calculated)
-0.584
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MCSKKEVESS GAMNNIQNHP NNLFFHQLVS HHHHQEPSQS ETFRAPGYNV ESGFTIFSQD SVSPIWPTST QPQFDPFTPP TPQASFYGSF FNRSQAHHQG
101: LQFGYEGFGG GTSATHHHQE QLRILAEALG PVVQAGSGPF GLQGELGKMT AQEIMDAKAL AASKSHSEAE RRRRERINNH LAKLRSILPN TTKTDKASLL
201: AEVIQHVKEL KRETSVISET NLVPTESDEL TVAFTEEEET EDGRLVIKAS LCCEDRSDLL PDMIKTLKSM RLKTLKAEIT TAGGRVKNVL FVTGEESSGE
301: DMEDYCIGMI EEALKAVMGK CNVEESSSSV NAKRQRMSSH NTITIIEQQQ YHH
101: LQFGYEGFGG GTSATHHHQE QLRILAEALG PVVQAGSGPF GLQGELGKMT AQEIMDAKAL AASKSHSEAE RRRRERINNH LAKLRSILPN TTKTDKASLL
201: AEVIQHVKEL KRETSVISET NLVPTESDEL TVAFTEEEET EDGRLVIKAS LCCEDRSDLL PDMIKTLKSM RLKTLKAEIT TAGGRVKNVL FVTGEESSGE
301: DMEDYCIGMI EEALKAVMGK CNVEESSSSV NAKRQRMSSH NTITIIEQQQ YHH
001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
Arabidopsis Description
BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.