Factsheet for GSMUA_Achr11P13440_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr4P32570_001
GSMUA_Achr6P06410_001
GSMUA_Achr6P20920_001
GSMUA_Achr6P24690_001
GSMUA_Achr9P09250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68810.1	GSMUA_Achr9P09250_001	AT4G26630.1	25387881
AT3G25710.1	GSMUA_Achr4P32570_001	AT1G49850.1	21798944
AT3G25710.1	GSMUA_Achr6P24690_001	AT1G49850.1	21798944
AT3G25710.1	GSMUA_Achr11P...	AT3G06430.1	21798944
AT3G25710.1	GSMUA_Achr11P...	AT3G48150.1	21798944
AT3G25710.1	GSMUA_Achr6P06410_001	AT3G48550.1	21798944
AT3G25710.1	GSMUA_Achr6P20920_001	AT3G48550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P21280_001	Banana	nucleus	87.44	87.44
GSMUA_Achr7P07280_001	Banana	nucleus	68.34	70.47
GSMUA_Achr6P30610_001	Banana	nucleus	67.34	70.16
Solyc04g006990.2.1	Tomato	nucleus	62.81	59.24
Bra025158.1-P	Field mustard	nucleus	60.3	53.81
PGSC0003DMT400019294	Potato	nucleus	62.81	47.89
Solyc05g009880.2.1	Tomato	nucleus	67.84	45.0
PGSC0003DMT400002155	Potato	nucleus	68.34	43.59
VIT_01s0011g02940.t01	Wine grape	nucleus	71.36	40.69
KRG92013	Soybean	nucleus	67.34	38.62
KRH34774	Soybean	nucleus	67.34	37.96
GSMUA_Achr8P23980_001	Banana	nucleus	43.22	37.89
KRH75497	Soybean	nucleus	69.85	36.97
GSMUA_Achr3P03510_001	Banana	nucleus	44.72	36.93
GSMUA_Achr2P20040_001	Banana	nucleus	45.73	36.55
GSMUA_Achr7P10740_001	Banana	nucleus	45.23	35.86
CDY13580	Canola	nucleus	60.3	35.82
CDX83546	Canola	nucleus	59.8	35.52
KRH70619	Soybean	nucleus	66.33	35.48
CDX99756	Canola	nucleus	57.79	34.53
CDY33592	Canola	nucleus	61.31	34.46
Bra026510.1-P	Field mustard	nucleus	57.79	34.33
AT3G25710.1	Thale cress	nucleus	59.3	34.3
CDX95989	Canola	nucleus	60.8	34.28
Bra004338.1-P	Field mustard	nucleus	60.8	34.18
GSMUA_Achr3P06780_001	Banana	cytosol	35.18	34.15
CDY07364	Canola	nucleus	59.3	33.43
Bra004015.1-P	Field mustard	nucleus	59.3	33.43
AT1G68810.1	Thale cress	nucleus	60.8	32.88
CDY04259	Canola	nucleus	58.29	32.77
GSMUA_Achr10P...	Banana	nucleus	41.71	32.42
GSMUA_Achr5P29390_001	Banana	nucleus	36.68	31.33
GSMUA_Achr9P15140_001	Banana	plastid	35.18	30.43
GSMUA_Achr7P21370_001	Banana	nucleus	40.7	27.55

Protein Annotations

EnsemblPlants:GSMUA_Achr11P13440_001	EnsemblPlants:GSMUA_Achr11T13440_001	EnsemblPlantsGene:GSMUA_Achr11G13440_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF77	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002956151	UniProt:M0RRX4	MapMan:15.5.32	:	:

Description

Transcription factor bHLH30 [Source:GMGC_GENE;Acc:GSMUA_Achr11G13440_001]

Coordinates

chr11:+:14128347..14129524

Molecular Weight (calculated)

21983.2 Da

IEP (calculated)

6.800

GRAVY (calculated)

-0.518

Length

199 amino acids

Sequence
(BLAST)

001: MTPQEIMDAK ALAASKSHSE AERRRRERIN THLARLRSLL PSTTKTDKAS LLAEVIQHVK ELKRQTLEMA EDSPLPTETD ELTVDATNDE DGRFLVRASL
101: CCDDRSDLLP DLIKALKVLK LRTLKAEIAT LGGRIKHVLV ITGEDGADHQ QPEQSVASIQ DALRAVMERA SSTDEPTAAG GIKRQRTTTL SSTLEHRSI

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.