Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES00272 | Sorghum | plastid | 43.78 | 42.15 |
| PGSC0003DMT400071293 | Potato | nucleus | 39.06 | 40.62 |
| HORVU1Hr1G024280.2 | Barley | plastid | 36.91 | 40.57 |
| Solyc03g095980.2.1 | Tomato | nucleus | 35.62 | 39.71 |
| TraesCS1D01G112000.1 | Wheat | plastid | 35.62 | 39.34 |
| TraesCS3B01G120200.1 | Wheat | nucleus, plastid | 42.92 | 38.91 |
| TraesCS1A01G110400.1 | Wheat | plastid | 35.19 | 38.68 |
| TraesCS3D01G104800.1 | Wheat | cytosol | 28.76 | 38.51 |
| TraesCS3A01G102900.1 | Wheat | nucleus, plastid | 40.77 | 38.31 |
| TraesCS1B01G129200.1 | Wheat | plastid | 34.76 | 38.21 |
| TraesCS3B01G120500.1 | Wheat | nucleus | 42.06 | 37.98 |
| GSMUA_Achr7P07280_001 | Banana | nucleus | 31.33 | 37.82 |
| HORVU3Hr1G018680.1 | Barley | nucleus | 43.35 | 37.69 |
| Zm00001d039764_P001 | Maize | nucleus | 41.2 | 36.78 |
| GSMUA_Achr11P... | Banana | nucleus | 31.33 | 36.68 |
| EES19097 | Sorghum | nucleus, plastid | 36.05 | 36.52 |
| GSMUA_Achr6P30610_001 | Banana | nucleus | 29.61 | 36.13 |
| GSMUA_Achr1P21280_001 | Banana | nucleus | 30.47 | 35.68 |
| TraesCS3D01G105100.2 | Wheat | mitochondrion, nucleus | 42.06 | 35.0 |
| KRH14931 | Soybean | nucleus, plastid | 39.06 | 34.47 |
| PGSC0003DMT400040448 | Potato | nucleus | 33.05 | 34.22 |
| KRG97707 | Soybean | nucleus | 39.91 | 33.82 |
| Os05t0163900-01 | Rice | nucleus | 39.06 | 33.58 |
| GSMUA_Achr7P10740_001 | Banana | nucleus | 36.05 | 33.47 |
| GSMUA_Achr3P06780_001 | Banana | cytosol | 29.18 | 33.17 |
| KRH31167 | Soybean | nucleus | 39.48 | 32.86 |
| GSMUA_Achr3P03510_001 | Banana | nucleus | 33.48 | 32.37 |
| Zm00001d037528_P001 | Maize | plastid | 37.77 | 32.35 |
| Solyc06g051260.2.1 | Tomato | nucleus | 30.9 | 32.0 |
| GSMUA_Achr9P15140_001 | Banana | plastid | 30.9 | 31.3 |
| VIT_13s0067g01350.t01 | Wine grape | nucleus | 39.48 | 30.98 |
| GSMUA_Achr2P20040_001 | Banana | nucleus | 33.05 | 30.92 |
| KRH73206 | Soybean | golgi, nucleus | 38.63 | 30.61 |
| GSMUA_Achr8P23980_001 | Banana | nucleus | 29.61 | 30.4 |
| GSMUA_Achr10P... | Banana | nucleus | 33.05 | 30.08 |
| Bra017024.1-P | Field mustard | nucleus, plastid | 32.62 | 30.04 |
| CDY07066 | Canola | nucleus, plastid | 32.19 | 29.64 |
| TraesCS3A01G102600.1 | Wheat | extracellular, mitochondrion | 41.63 | 29.04 |
| CDX93211 | Canola | nucleus, plastid | 31.33 | 28.85 |
| AT2G40200.1 | Thale cress | nucleus | 29.61 | 27.17 |
| CDY24921 | Canola | nucleus | 27.47 | 26.67 |
| Bra000177.1-P | Field mustard | nucleus | 25.32 | 25.32 |
| CDY07615 | Canola | nucleus | 25.32 | 25.32 |
| GSMUA_Achr7P21370_001 | Banana | nucleus | 30.04 | 23.81 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P29390_001 | EnsemblPlants:GSMUA_Achr5T29390_001 | EnsemblPlantsGene:GSMUA_Achr5G29390_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF181 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | SUPFAM:SSF55021 | UniParc:UPI0002952CFB | UniProt:M0T2R3 | MapMan:15.5.32 | : |
Description
Putative Transcription factor bHLH30 [Source:GMGC_GENE;Acc:GSMUA_Achr5G29390_001]
Coordinates
chr5:+:29144918..29146296
Molecular Weight (calculated)
25981.8 Da
IEP (calculated)
7.104
GRAVY (calculated)
-0.554
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MAECFASSSW SEEGRDGSSC SSLMAPLRLL PGQAKPASEA RDSAALRIHS EAERRRRERI NAHLSTLRRM IPNSTKMDKA SLLGRVVDHL KDLKRRALDV
101: DGTIAIPAEV NEVDVEFDAG HQHAFPEEEE EEGDDDDKLY IKASVCCDDR PDLLEELSDA FRRLGLRAVR ADMMTLGGRS RNVFVLFLKD GDRSVCLSSL
201: NRSIRETLGR VASSGAPQSN VFVSRRRKAM RSH
101: DGTIAIPAEV NEVDVEFDAG HQHAFPEEEE EEGDDDDKLY IKASVCCDDR PDLLEELSDA FRRLGLRAVR ADMMTLGGRS RNVFVLFLKD GDRSVCLSSL
201: NRSIRETLGR VASSGAPQSN VFVSRRRKAM RSH
001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
Arabidopsis Description
BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.