Factsheet for Bra000177.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07615	Canola	nucleus	100.0	100.0
AT2G40200.1	Thale cress	nucleus	80.69	74.02
Bra017024.1-P	Field mustard	nucleus, plastid	78.54	72.33
Solyc03g095980.2.1	Tomato	nucleus	36.48	40.67
PGSC0003DMT400071293	Potato	nucleus	38.2	39.73
PGSC0003DMT400040448	Potato	nucleus	36.48	37.78
Solyc06g051260.2.1	Tomato	nucleus	35.19	36.44
KRH14931	Soybean	nucleus, plastid	40.34	35.61
KRG97707	Soybean	nucleus	41.63	35.27
KRH31167	Soybean	nucleus	42.06	35.0
KRH73206	Soybean	golgi, nucleus	40.77	32.31
VIT_13s0067g01350.t01	Wine grape	nucleus	39.48	30.98
Bra025158.1-P	Field mustard	nucleus	27.9	29.15
EES00272	Sorghum	plastid	29.61	28.51
TraesCS3D01G104800.1	Wheat	cytosol	21.03	28.16
Bra014672.1-P	Field mustard	nucleus	27.9	28.02
Bra016951.1-P	Field mustard	nucleus	30.47	27.95
TraesCS3B01G120200.1	Wheat	nucleus, plastid	30.47	27.63
TraesCS3B01G120500.1	Wheat	nucleus	30.47	27.52
Bra004599.1-P	Field mustard	nucleus	29.18	27.2
TraesCS3A01G102900.1	Wheat	nucleus, plastid	28.76	27.02
Zm00001d039764_P001	Maize	nucleus	30.04	26.82
TraesCS1A01G110400.1	Wheat	plastid	24.03	26.42
TraesCS1B01G129200.1	Wheat	plastid	24.03	26.42
TraesCS1D01G112000.1	Wheat	plastid	23.61	26.07
HORVU1Hr1G024280.2	Barley	plastid	23.61	25.94
Os05t0163900-01	Rice	nucleus	30.04	25.83
GSMUA_Achr5P29390_001	Banana	nucleus	25.32	25.32
HORVU3Hr1G018680.1	Barley	nucleus	28.76	25.0
TraesCS3D01G105100.2	Wheat	mitochondrion, nucleus	28.33	23.57
EES19097	Sorghum	nucleus, plastid	23.18	23.48
TraesCS3A01G102600.1	Wheat	extracellular, mitochondrion	30.47	21.26
Zm00001d037528_P001	Maize	plastid	24.46	20.96
Bra010635.1-P	Field mustard	plastid	19.74	20.54
Bra026510.1-P	Field mustard	nucleus	29.18	20.3
Bra004338.1-P	Field mustard	nucleus	28.33	18.64
Bra004015.1-P	Field mustard	nucleus	27.9	18.41

Protein Annotations

EnsemblPlants:Bra000177.1	EnsemblPlants:Bra000177.1-P	EnsemblPlantsGene:Bra000177	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF201	PFAM:PF00010	PFscan:PS50888	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI00025402C8	UniProt:M4C7J9	MapMan:15.5.32	:	:	:

Description

AT2G40200 (E=1e-081) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA03:+:9725504..9726637

Molecular Weight (calculated)

25844.6 Da

IEP (calculated)

8.203

GRAVY (calculated)

-0.396

Length

233 amino acids

Sequence
(BLAST)

001: MENSYDSAAA AKWSDSTSPY NMVSWSLLQP GSSDSDLSRF NLGSSDELVG GNDKAESVSR SHRLAEKRRR DRINSHLSAL RKLVPDSDKL DKAALLASVI
101: EQVKELKQEA KESPIFQDLP TEADEVTILP ETNSNTTIFK ASFCCPDQTE AISEIVSVLT KFKLETIQGE IICVGGRMRI NFILKETATT TSVKALKQSL
201: CAALNRITSL TTSSVCRIRS KRQRWFLSSN YSQ

Best Arabidopsis Sequence Match ( AT2G40200.1 )
(BLAST)

001: MENSYDSSKW SDSTTPYMVS WSLQSESSDS DWNRFNLGFS SSSFGGNFPA DDCVGGIEKA ESLSRSHRLA EKRRRDRINS HLTALRKLVP NSDKLDKAAL
101: LATVIEQVKE LKQKAAESPI FQDLPTEADE VTVQPETISD FESNTNTIIF KASFCCEDQP EAISEIIRVL TKLQLETIQA EIISVGGRMR INFILKDSNC
201: NETTNIAASA KALKQSLCSA LNRITSSSTT TSSVCRIRSK RQRWFLSSHY SHNE

Arabidopsis Description

BHLH51Transcription factor bHLH51 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.