Factsheet for Zm00001d039764_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00272	Sorghum	plastid	79.69	85.95
TraesCS3A01G102900.1	Wheat	nucleus, plastid	60.15	63.31
TraesCS3B01G120500.1	Wheat	nucleus	62.45	63.18
TraesCS3B01G120200.1	Wheat	nucleus, plastid	62.07	63.03
TraesCS3D01G104800.1	Wheat	cytosol	41.38	62.07
HORVU3Hr1G018680.1	Barley	nucleus	61.3	59.7
TraesCS3D01G105100.2	Wheat	mitochondrion, nucleus	60.54	56.43
TraesCS3A01G102600.1	Wheat	extracellular, mitochondrion	63.22	49.4
Zm00001d037528_P001	Maize	plastid	45.59	43.75
GSMUA_Achr5P29390_001	Banana	nucleus	36.78	41.2
PGSC0003DMT400071293	Potato	nucleus	32.18	37.5
Solyc03g095980.2.1	Tomato	nucleus	29.12	36.36
PGSC0003DMT400040448	Potato	nucleus	30.65	35.56
Solyc06g051260.2.1	Tomato	nucleus	29.5	34.22
KRG97707	Soybean	nucleus	34.1	32.36
Zm00001d005919_P001	Maize	nucleus	26.44	32.24
KRH14931	Soybean	nucleus, plastid	32.57	32.2
KRH31167	Soybean	nucleus	33.72	31.43
CDY07066	Canola	nucleus, plastid	30.27	31.23
Zm00001d020763_P001	Maize	nucleus	27.2	31.14
AT2G40200.1	Thale cress	nucleus	30.27	31.1
CDX93211	Canola	nucleus, plastid	29.89	30.83
Bra017024.1-P	Field mustard	nucleus, plastid	29.89	30.83
Bra000177.1-P	Field mustard	nucleus	26.82	30.04
CDY07615	Canola	nucleus	26.82	30.04
CDY24921	Canola	nucleus	27.2	29.58
KRH73206	Soybean	golgi, nucleus	32.57	28.91
VIT_13s0067g01350.t01	Wine grape	nucleus	32.18	28.28
Zm00001d031818_P001	Maize	nucleus	25.67	28.03
Zm00001d034596_P001	Maize	nucleus	24.52	27.95
Zm00001d005740_P001	Maize	nucleus	27.2	20.4
Zm00001d032213_P001	Maize	nucleus	27.2	20.11
Zm00001d050394_P001	Maize	nucleus	27.2	19.19
Zm00001d028504_P001	Maize	nucleus	28.74	19.18
Zm00001d047878_P001	Maize	nucleus	29.12	17.8

Protein Annotations

EntrezGene:100382374	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:BT064087	UniProt:C0P718	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
EMBL:KJ726869	ProteinID:ONM29898.1	ProteinID:ONM29899.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF190	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0001948B4E	EnsemblPlantsGene:Zm00001d039764	EnsemblPlants:Zm00001d039764_P001
EnsemblPlants:Zm00001d039764_T001	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

bHLH-transcription factor 104Transcription factor bHLH51

Coordinates

chr3:-:14220288..14222436

Molecular Weight (calculated)

27894.4 Da

IEP (calculated)

10.730

GRAVY (calculated)

-0.435

Length

261 amino acids

Sequence
(BLAST)

001: MMPGSMAARQ PLQGKQELQP YDGRDPSALG AGGSPVLLPR QQESAAPPAV RVAPPPDMSS SSGSGRSATE ARALKVHSEA ERRRRERINA HLATLRRMVP
101: DTRQMDKATL LARVVEQVKL LKRKASEAAT TTTQSTPLPP ETDEVSIELH TGDAGADRSV YIRASISCAD RPDLVAGLAQ AFHGLRLKTV RANMTSLGGR
201: ARHVFVLCME EGWGSAGAGA GASLRSLKEA VRQALARVAS PETAYGSSPF QSKRQMILES H

Best Arabidopsis Sequence Match ( AT2G40200.1 )
(BLAST)

001: MENSYDSSKW SDSTTPYMVS WSLQSESSDS DWNRFNLGFS SSSFGGNFPA DDCVGGIEKA ESLSRSHRLA EKRRRDRINS HLTALRKLVP NSDKLDKAAL
101: LATVIEQVKE LKQKAAESPI FQDLPTEADE VTVQPETISD FESNTNTIIF KASFCCEDQP EAISEIIRVL TKLQLETIQA EIISVGGRMR INFILKDSNC
201: NETTNIAASA KALKQSLCSA LNRITSSSTT TSSVCRIRSK RQRWFLSSHY SHNE

Arabidopsis Description

BHLH51Transcription factor bHLH51 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.