Factsheet for Zm00001d047878_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003978_P001
Zm00001d013757_P010
Zm00001d016564_P001
Zm00001d017475_P002
Zm00001d018693_P001
Zm00001d028055_P001
Zm00001d030843_P001
Zm00001d033159_P001
Zm00001d048134_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68810.1	Zm00001d013757_P010	AT4G26630.1	25387881
AT1G68810.1	Zm00001d033159_P001	AT4G26630.1	25387881
AT3G25710.1	Zm00001d028055_P001	AT1G49850.1	21798944
AT3G25710.1	Zm00001d030843_P001	AT1G49850.1	21798944
AT3G25710.1	Zm00001d048134_P001	AT1G49850.1	21798944
AT3G25710.1	Zm00001d018693_P001	AT3G06430.1	21798944
AT3G25710.1	Zm00001d017475_P002	AT3G48150.1	21798944
AT3G25710.1	Zm00001d003978_P001	AT3G48550.1	21798944
AT3G25710.1	Zm00001d016564_P001	AT3G48550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028504_P001	Maize	nucleus	65.11	71.1
Os03t0260600-01	Rice	nucleus	66.51	69.44
GSMUA_Achr6P30610_001	Banana	nucleus	28.57	63.87
GSMUA_Achr7P07280_001	Banana	nucleus	28.1	62.18
Solyc04g006990.2.1	Tomato	nucleus	26.46	53.55
Bra025158.1-P	Field mustard	nucleus	27.17	52.02
Solyc05g009880.2.1	Tomato	nucleus	33.72	48.0
VIT_01s0011g02940.t01	Wine grape	nucleus	39.11	47.85
PGSC0003DMT400002155	Potato	nucleus	34.19	46.79
PGSC0003DMT400019294	Potato	nucleus	28.1	45.98
KRG92013	Soybean	nucleus	36.07	44.38
KRH34774	Soybean	nucleus	36.53	44.19
KRH75497	Soybean	nucleus	38.88	44.15
KRH70619	Soybean	nucleus	37.47	43.01
CDX95989	Canola	nucleus	34.66	41.93
CDY33592	Canola	nucleus	34.66	41.81
Bra004338.1-P	Field mustard	nucleus	34.66	41.81
CDY07364	Canola	nucleus	34.19	41.36
Bra004015.1-P	Field mustard	nucleus	34.19	41.36
CDX99756	Canola	nucleus	32.08	41.14
AT1G68810.1	Thale cress	nucleus	35.36	41.03
CDY13580	Canola	nucleus	32.08	40.9
CDX83546	Canola	nucleus	32.08	40.9
AT3G25710.1	Thale cress	nucleus	32.79	40.7
Bra026510.1-P	Field mustard	nucleus	31.85	40.6
CDY04259	Canola	nucleus	33.49	40.4
Zm00001d032213_P001	Maize	nucleus	32.79	39.66
Zm00001d050394_P001	Maize	nucleus	34.19	39.46
Zm00001d005740_P001	Maize	nucleus	31.15	38.22
Zm00001d034596_P001	Maize	nucleus	20.14	37.55
Zm00001d005919_P001	Maize	nucleus	15.69	31.31
Zm00001d020763_P001	Maize	nucleus	16.39	30.7
Zm00001d031818_P001	Maize	nucleus	16.63	29.71
Zm00001d039764_P001	Maize	nucleus	17.8	29.12
Zm00001d037528_P001	Maize	plastid	15.46	24.26

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1D6PEB2	ProteinID:AQL07891.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF77
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000843B21B	EnsemblPlantsGene:Zm00001d047878	EnsemblPlants:Zm00001d047878_P001	EnsemblPlants:Zm00001d047878_T001
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

bHLH-transcription factor 63Putative HLH DNA-binding domain superfamily protein

Coordinates

chr9:-:144091969..144094662

Molecular Weight (calculated)

46208.4 Da

IEP (calculated)

9.028

GRAVY (calculated)

-0.731

Length

427 amino acids

Sequence
(BLAST)

001: MGGHGDHHHH HQEVGVLVDD DGDDEELEHQ GRACGGATSG GVVEQGVGDG GSAGHQDAAG MAFEASISSV GSVSAATTMA PPQILCWPPP PQQQQLQQHH
101: NLGGGHHQSP FFPLLQPPPP PPPPPPQPPF FADLYARRAL QLAYDHHHSG GGGGPSTSSD PLGLYMGHPH HHQQHAGPGM MMMMPPPFAS SSSPFGDFVG
201: RMTAQEILDA KALAASKSHS EAERRRRERI NAHLARLRSL LPNTTKTDKA SLLAEVIQHV KELKRQTSEI TEEACQLPTE SDELTVDASS DEDGRLVVRA
301: SLCCDDRADL LPDLVRALKA LRLRALKAEI TTLGGRVKNV LLITADDSSA AAGCHDDGGR RRRMTTTTTG RRRRRPCPCR RSSTRSRPST RPCAPSWSAR
401: RRRRPPRTRE RPPPGSSGSA RRAFRRS

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.