Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g006990.2.1 | Tomato | nucleus | 75.1 | 92.89 |
| GSMUA_Achr6P30610_001 | Banana | nucleus | 46.74 | 63.87 |
| GSMUA_Achr1P21280_001 | Banana | nucleus | 48.66 | 63.82 |
| GSMUA_Achr11P... | Banana | nucleus | 47.89 | 62.81 |
| GSMUA_Achr7P07280_001 | Banana | nucleus | 44.44 | 60.1 |
| Bra025158.1-P | Field mustard | nucleus | 49.04 | 57.4 |
| PGSC0003DMT400002155 | Potato | nucleus | 62.45 | 52.24 |
| VIT_01s0011g02940.t01 | Wine grape | nucleus | 61.69 | 46.13 |
| KRG92013 | Soybean | nucleus | 59.77 | 44.96 |
| KRH34774 | Soybean | nucleus | 60.15 | 44.48 |
| CDX99756 | Canola | nucleus | 53.64 | 42.04 |
| Bra026510.1-P | Field mustard | nucleus | 53.64 | 41.79 |
| CDY07364 | Canola | nucleus | 56.32 | 41.64 |
| Bra004015.1-P | Field mustard | nucleus | 56.32 | 41.64 |
| KRH75497 | Soybean | nucleus | 59.77 | 41.49 |
| KRH70619 | Soybean | nucleus | 58.62 | 41.13 |
| CDY13580 | Canola | nucleus | 52.49 | 40.9 |
| CDX83546 | Canola | nucleus | 52.49 | 40.9 |
| CDX95989 | Canola | nucleus | 55.17 | 40.79 |
| AT3G25710.1 | Thale cress | nucleus | 53.64 | 40.7 |
| Bra004338.1-P | Field mustard | nucleus | 55.17 | 40.68 |
| CDY33592 | Canola | nucleus | 54.79 | 40.4 |
| AT1G68810.1 | Thale cress | nucleus | 56.7 | 40.22 |
| CDY04259 | Canola | nucleus | 54.41 | 40.11 |
| TraesCS5D01G237300.1 | Wheat | nucleus | 47.89 | 37.09 |
| TraesCS5B01G229000.1 | Wheat | nucleus | 47.13 | 36.83 |
| TraesCS5A01G230500.1 | Wheat | nucleus | 46.74 | 36.42 |
| Os08t0432800-01 | Rice | nucleus | 47.13 | 35.65 |
| PGSC0003DMT400021599 | Potato | nucleus | 35.63 | 35.5 |
| PGSC0003DMT400060615 | Potato | cytosol | 30.27 | 35.27 |
| Os09t0410700-00 | Rice | nucleus | 47.89 | 34.44 |
| HORVU4Hr1G061760.1 | Barley | nucleus | 52.49 | 34.08 |
| TraesCS4B01G217400.1 | Wheat | nucleus | 52.87 | 33.99 |
| Zm00001d028504_P001 | Maize | nucleus | 50.57 | 33.76 |
| TraesCS4A01G087000.1 | Wheat | nucleus | 52.49 | 33.74 |
| TraesCS4D01G217700.1 | Wheat | nucleus | 52.49 | 33.74 |
| Zm00001d005740_P001 | Maize | nucleus | 44.83 | 33.62 |
| HORVU5Hr1G066530.2 | Barley | cytosol, nucleus | 47.13 | 33.52 |
| Zm00001d032213_P001 | Maize | nucleus | 45.21 | 33.43 |
| EER98886 | Sorghum | nucleus | 44.83 | 33.14 |
| PGSC0003DMT400052622 | Potato | nucleus | 31.8 | 32.55 |
| Os03t0260600-01 | Rice | nucleus | 50.96 | 32.52 |
| Zm00001d050394_P001 | Maize | nucleus | 45.98 | 32.43 |
| PGSC0003DMT400026449 | Potato | mitochondrion | 28.35 | 31.49 |
| PGSC0003DMT400024185 | Potato | nucleus | 24.52 | 31.37 |
| EES15038 | Sorghum | nucleus | 46.36 | 30.87 |
| OQU92884 | Sorghum | nucleus | 52.11 | 30.56 |
| PGSC0003DMT400071293 | Potato | nucleus | 24.52 | 28.57 |
| Zm00001d047878_P001 | Maize | nucleus | 45.98 | 28.1 |
| PGSC0003DMT400040448 | Potato | nucleus | 22.99 | 26.67 |
Protein Annotations
| EntrezGene:102587263 | MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M1ABV2 | PFAM:PF00010 |
| EnsemblPlantsGene:PGSC0003DMG400007457 | PGSC:PGSC0003DMG400007457 | EnsemblPlants:PGSC0003DMT400019294 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF77 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002951489 | RefSeq:XP_006366064.1 | InterPro:bHLH_dom | SEG:seg |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007457]
Coordinates
chr4:+:718893..722915
Molecular Weight (calculated)
29700.9 Da
IEP (calculated)
6.170
GRAVY (calculated)
-0.764
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MYGSGNRSSI LPWNSFNTLE DPFIFHGSSY YGDLFNKIIP QFPCQDHNEV QKMMNSQEIM DAKALAASKS HSEAERKRRE RINNHLAKLR SLLPSTTKTD
101: KASLLAEVIQ HVKELKRQTS QIAQTNPPIP TEINELTVDY CNNEEGILMI KASLCCEDRS DLLHDLIKTL KSLRLKTLKA EITTLGGRVR SVLFITKDQQ
201: DDDDTWPIND NDNDNDDDQM QYCLRSIQEA LKEVVEKSNG NDSGNSGGIK RQRTSNNNIH Y
101: KASLLAEVIQ HVKELKRQTS QIAQTNPPIP TEINELTVDY CNNEEGILMI KASLCCEDRS DLLHDLIKTL KSLRLKTLKA EITTLGGRVR SVLFITKDQQ
201: DDDDTWPIND NDNDNDDDQM QYCLRSIQEA LKEVVEKSNG NDSGNSGGIK RQRTSNNNIH Y
001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
Arabidopsis Description
BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.