Factsheet for PGSC0003DMT400052622

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053290.2.1	Tomato	nucleus	96.86	96.86
VIT_12s0028g02350.t01	Wine grape	nucleus	62.75	61.78
KRH22294	Soybean	nucleus	54.9	56.22
KRH27035	Soybean	nucleus	53.73	55.02
KRH55806	Soybean	nucleus	50.59	49.81
KRH25720	Soybean	extracellular, nucleus	50.2	49.61
GSMUA_Achr7P10740_001	Banana	nucleus	47.84	48.61
GSMUA_Achr3P03510_001	Banana	nucleus	43.14	45.64
GSMUA_Achr10P...	Banana	nucleus	45.49	45.31
GSMUA_Achr2P20040_001	Banana	nucleus	43.92	44.98
PGSC0003DMT400026449	Potato	mitochondrion	39.61	42.98
TraesCS3A01G142900.1	Wheat	nucleus	43.53	42.69
HORVU3Hr1G027630.3	Barley	nucleus	41.96	42.46
TraesCS3D01G144700.1	Wheat	nucleus	41.96	41.96
KXG31555	Sorghum	nucleus	41.57	39.26
Os01t0218100-01	Rice	nucleus	38.43	36.7
PGSC0003DMT400071293	Potato	nucleus	29.8	33.93
PGSC0003DMT400019294	Potato	nucleus	32.55	31.8
PGSC0003DMT400060615	Potato	cytosol	27.84	31.7
PGSC0003DMT400040448	Potato	nucleus	26.67	30.22
PGSC0003DMT400002155	Potato	nucleus	36.08	29.49
PGSC0003DMT400021599	Potato	nucleus	28.24	27.48
PGSC0003DMT400024185	Potato	nucleus	21.96	27.45

Protein Annotations

EntrezGene:102595445	MapMan:15.5.32	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1BTP9	PFAM:PF00010
EnsemblPlantsGene:PGSC0003DMG400020427	PGSC:PGSC0003DMG400020427	EnsemblPlants:PGSC0003DMT400052622	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF82
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00029647BC	RefSeq:XP_006348853.1	InterPro:bHLH_dom	SEG:seg

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020427]

Coordinates

chr7:-:50054673..50057332

Molecular Weight (calculated)

27882.2 Da

IEP (calculated)

7.507

GRAVY (calculated)

-0.316

Length

255 amino acids

Sequence
(BLAST)

001: MDFLSSFNGL NEVYGGFQGI IGNGLSSSSS LVLDNESSEL VKAMVKPGGK GDNQEKALIA LKNHSEAERR RRERINGHLG TLRNLIPGTN KMDKAALLAK
101: VIGHIKELRV NAAEATKGVL VPTDIDEVKV EQQPEGSDGA TYSVKASLCC DYKHELISDL RQALDTLPLK TLRAEIATLG SRMVSVFVIT EGNEGNIEDT
201: ERCQLLITSV RQALRSVLDK FYASEEFSSR STLSSKRRRV SFLNSSSSSS LGDFW

Best Arabidopsis Sequence Match ( AT2G40200.1 )
(BLAST)

001: MENSYDSSKW SDSTTPYMVS WSLQSESSDS DWNRFNLGFS SSSFGGNFPA DDCVGGIEKA ESLSRSHRLA EKRRRDRINS HLTALRKLVP NSDKLDKAAL
101: LATVIEQVKE LKQKAAESPI FQDLPTEADE VTVQPETISD FESNTNTIIF KASFCCEDQP EAISEIIRVL TKLQLETIQA EIISVGGRMR INFILKDSNC
201: NETTNIAASA KALKQSLCSA LNRITSSSTT TSSVCRIRSK RQRWFLSSHY SHNE

Arabidopsis Description

BHLH51Transcription factor bHLH51 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.