Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 67.33 | 66.02 |
| GSMUA_Achr2P20040_001 | Banana | nucleus | 63.74 | 64.26 |
| GSMUA_Achr3P03510_001 | Banana | nucleus | 59.76 | 62.24 |
| Solyc07g053290.2.1 | Tomato | nucleus | 49.0 | 48.24 |
| GSMUA_Achr6P30610_001 | Banana | nucleus | 36.65 | 48.17 |
| PGSC0003DMT400052622 | Potato | nucleus | 48.61 | 47.84 |
| VIT_12s0028g02350.t01 | Wine grape | nucleus | 49.0 | 47.49 |
| TraesCS3A01G142900.1 | Wheat | nucleus | 49.0 | 47.31 |
| VIT_10s0003g01160.t01 | Wine grape | nucleus | 29.88 | 47.17 |
| GSMUA_Achr7P07280_001 | Banana | nucleus | 35.86 | 46.63 |
| VIT_14s0068g01580.t01 | Wine grape | nucleus | 48.61 | 46.39 |
| TraesCS3D01G144700.1 | Wheat | nucleus | 47.01 | 46.27 |
| KRH27035 | Soybean | nucleus | 45.42 | 45.78 |
| KRH22294 | Soybean | nucleus | 45.42 | 45.78 |
| GSMUA_Achr1P21280_001 | Banana | nucleus | 36.26 | 45.73 |
| HORVU3Hr1G027630.3 | Barley | nucleus | 45.82 | 45.63 |
| PGSC0003DMT400026449 | Potato | mitochondrion | 42.63 | 45.53 |
| GSMUA_Achr11P... | Banana | nucleus | 35.86 | 45.23 |
| KRH50172 | Soybean | nucleus | 46.61 | 42.86 |
| Solyc02g076920.2.1 | Tomato | cytosol, nucleus, plastid | 40.64 | 42.5 |
| KRH71297 | Soybean | nucleus | 45.82 | 42.44 |
| KRH55806 | Soybean | nucleus | 43.03 | 41.7 |
| KXG31555 | Sorghum | nucleus | 44.62 | 41.48 |
| KRH25720 | Soybean | extracellular, nucleus | 42.23 | 41.09 |
| Os01t0218100-01 | Rice | nucleus | 43.43 | 40.82 |
| GSMUA_Achr5P29390_001 | Banana | nucleus | 33.47 | 36.05 |
| GSMUA_Achr8P23980_001 | Banana | nucleus | 29.88 | 33.04 |
| GSMUA_Achr3P06780_001 | Banana | cytosol | 25.9 | 31.71 |
| GSMUA_Achr9P15140_001 | Banana | plastid | 27.49 | 30.0 |
| GSMUA_Achr7P21370_001 | Banana | nucleus | 30.68 | 26.19 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P10740_001 | EnsemblPlants:GSMUA_Achr7T10740_001 | EnsemblPlantsGene:GSMUA_Achr7G10740_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF201 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000294F54F | UniProt:M0TGG2 | MapMan:15.5.32 | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_28.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr7G10740_001]
Coordinates
chr7:+:8631433..8635284
Molecular Weight (calculated)
27760.4 Da
IEP (calculated)
9.323
GRAVY (calculated)
-0.320
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVPVRDVR DFEGFSGGFG SGFGPTLASS SSLELDSDGR ELVKVSRLGK MKGGVGVSDA KGVMALKSHC EAERRRRERI NRHLATLRSM VPSTEKLDKA
101: ALLAEVINHM KELKTNAVEI SKCYSIPSDI DEVRVEVEDV MKDGNFLVKA SLCCEDRPEL FADLRLTLQS LQLKTVRAEI STLGGRIKNV LVMTSDRNYN
201: NAERQLCMTS IRQALKSILD SVNSQADFLP RPSFSNKRRR ISLFESSSSL S
101: ALLAEVINHM KELKTNAVEI SKCYSIPSDI DEVRVEVEDV MKDGNFLVKA SLCCEDRPEL FADLRLTLQS LQLKTVRAEI STLGGRIKNV LVMTSDRNYN
201: NAERQLCMTS IRQALKSILD SVNSQADFLP RPSFSNKRRR ISLFESSSSL S
001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
Arabidopsis Description
BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.