Factsheet for VIT_14s0068g01580.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g01160.t01	Wine grape	nucleus	46.77	77.36
KRH50172	Soybean	nucleus	58.56	56.41
KRH71297	Soybean	nucleus	55.89	54.24
VIT_12s0028g02350.t01	Wine grape	nucleus	52.85	53.67
Solyc02g076920.2.1	Tomato	cytosol, nucleus, plastid	47.53	52.08
PGSC0003DMT400026449	Potato	mitochondrion	45.63	51.06
GSMUA_Achr7P10740_001	Banana	nucleus	46.39	48.61
GSMUA_Achr3P03510_001	Banana	nucleus	42.97	46.89
GSMUA_Achr10P...	Banana	nucleus	45.63	46.88
GSMUA_Achr2P20040_001	Banana	nucleus	43.73	46.18
HORVU3Hr1G027630.3	Barley	nucleus	39.92	41.67
TraesCS3A01G142900.1	Wheat	nucleus	41.06	41.54
TraesCS3D01G144700.1	Wheat	nucleus	39.16	40.39
Os01t0218100-01	Rice	nucleus	40.3	39.7
KXG31555	Sorghum	nucleus	40.3	39.26
VIT_08s0040g01240.t01	Wine grape	nucleus	28.9	31.8
VIT_18s0001g07410.t01	Wine grape	nucleus	26.62	31.67
VIT_01s0011g02940.t01	Wine grape	nucleus	37.64	28.37
VIT_13s0067g01350.t01	Wine grape	nucleus	30.04	26.6

Protein Annotations

EntrezGene:100242889	wikigene:100242889	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CCB47002	ProteinID:CCB47002.1
ncoils:Coil	UniProt:F6H459	EMBL:FN595232	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100242889	wikigene:LOC100242889
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF82	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI00015C85BB	ArrayExpress:VIT_14s0068g01580	EnsemblPlantsGene:VIT_14s0068g01580	EnsemblPlants:VIT_14s0068g01580.t01	RefSeq:XP_002274955	RefSeq:XP_002274955.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr14:-:25280932..25283918

Molecular Weight (calculated)

29200.6 Da

IEP (calculated)

9.703

GRAVY (calculated)

-0.528

Length

263 amino acids

Sequence
(BLAST)

001: MDSNSWNSAS SRGSDCFQVF DPFSHNTGGD RGVVRGGSLV LDSDRGELVK APVIKVKKEV PEAKAMAALK SHSDAERRRR ERINAHLDTL RGFVPCTEKM
101: DKATLLAEVI QQVKELKRNA TKASKGLLLP IEEDEVRVEP HDDRTDGAFS LRASVCCDYR PELLSYIKQA LDTLPINTVK AEISTLGGRM KNVFVFTSCK
201: QGNSNDSKAH MLLASSVHQA LSSILYKVST SPEFSPRTTH PKKRRRVSIF DSSSSSSSEQ RFW

Best Arabidopsis Sequence Match ( AT2G40200.1 )
(BLAST)

001: MENSYDSSKW SDSTTPYMVS WSLQSESSDS DWNRFNLGFS SSSFGGNFPA DDCVGGIEKA ESLSRSHRLA EKRRRDRINS HLTALRKLVP NSDKLDKAAL
101: LATVIEQVKE LKQKAAESPI FQDLPTEADE VTVQPETISD FESNTNTIIF KASFCCEDQP EAISEIIRVL TKLQLETIQA EIISVGGRMR INFILKDSNC
201: NETTNIAASA KALKQSLCSA LNRITSSSTT TSSVCRIRSK RQRWFLSSHY SHNE

Arabidopsis Description

BHLH51Transcription factor bHLH51 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.