CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50172	Soybean	nucleus	90.77	90.11
VIT_10s0003g01160.t01	Wine grape	nucleus	33.58	57.23
VIT_14s0068g01580.t01	Wine grape	nucleus	54.24	55.89
PGSC0003DMT400026449	Potato	mitochondrion	41.33	47.66
GSMUA_Achr10P...	Banana	nucleus	43.54	46.09
Solyc02g076920.2.1	Tomato	cytosol, nucleus, plastid	40.59	45.83
GSMUA_Achr7P10740_001	Banana	nucleus	42.44	45.82
GSMUA_Achr3P03510_001	Banana	nucleus	40.22	45.23
GSMUA_Achr2P20040_001	Banana	nucleus	41.33	44.98
KRH22294	Soybean	nucleus	39.48	42.97
KRH27035	Soybean	nucleus	39.48	42.97
KRH55806	Soybean	nucleus	38.38	40.15
KRH25720	Soybean	extracellular, nucleus	37.27	39.15
HORVU3Hr1G027630.3	Barley	nucleus	35.42	38.1
Os01t0218100-01	Rice	nucleus	36.16	36.7
TraesCS3A01G142900.1	Wheat	nucleus	35.06	36.54
TraesCS3D01G144700.1	Wheat	nucleus	34.32	36.47
KXG31555	Sorghum	nucleus	35.06	35.19
KRH14931	Soybean	nucleus, plastid	29.15	29.92
KRG95083	Soybean	nucleus	27.31	29.48
KRH16843	Soybean	cytosol	25.83	29.17
KRG97707	Soybean	nucleus	29.52	29.09
KRH66750	Soybean	plastid	26.57	28.92
KRH54953	Soybean	nucleus	26.57	28.46
KRH72457	Soybean	nucleus	26.57	28.35
KRH31167	Soybean	nucleus	29.15	28.21
KRG92013	Soybean	nucleus	35.06	27.38
KRH69661	Soybean	mitochondrion	21.4	27.36
KRH34774	Soybean	nucleus	35.06	26.91
KRH73206	Soybean	golgi, nucleus	29.15	26.87
KRH70619	Soybean	nucleus	35.06	25.54
KRH75497	Soybean	nucleus	35.06	25.27

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02000886	EnsemblPlantsGene:GLYMA_02G139700	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1JF19	InterPro:IPR011598	InterPro:IPR036638
EnsemblPlants:KRH71297	ProteinID:KRH71297	ProteinID:KRH71297.1	EMBL:KT031099	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF82	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0001BA4E5A	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:14495636..14499937

Molecular Weight (calculated)

29613.3 Da

IEP (calculated)

7.397

GRAVY (calculated)

-0.274

Length

271 amino acids

Sequence
(BLAST)

001: MVYSFYDKTS SSSGSDISGL FNPTLHNLGA CNDLSSSPHS LVFESDKGEL VKCLAAAKVG KSEICEAKAL AALKNHSEAE RRRRERINGH LATLRGLVPS
101: TEKMDKATLL AEVISQVKEL KKNAAEVSKG FLIPKDADEV KVEPYNDHEG GEGSMSYSAT ICCDFRPEIL SDLRQTLDSL PLHLVKAEIS TLAGRMKNVF
201: VFTCCKENIN NIDFEKCQAL ASTVHQALCS VMEKASASLD FSPRTSHASK RRRLCFIETS NSTCNHGSCL C

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.