CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91075
KRG98502
KRG98507
KRH02371
KRH02451
KRH03966
KRH24006
KRH27971
KRH29310
KRH35698
KRH37687
KRH46360
KRH46364
KRH57236
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68810.1	KRG98502	AT4G26630.1	25387881
AT1G68810.1	KRG98507	AT4G26630.1	25387881
AT1G68810.1	KRH46360	AT4G26630.1	25387881
AT1G68810.1	KRH46364	AT4G26630.1	25387881
AT3G25710.1	KRG91075	AT1G49850.1	21798944
AT3G25710.1	KRH35698	AT1G49850.1	21798944
AT3G25710.1	KRH02371	AT3G06430.1	21798944
AT3G25710.1	KRH02451	AT3G06430.1	21798944
AT3G25710.1	KRH37687	AT3G06430.1	21798944
AT3G25710.1	KRH24006	AT3G48150.1	21798944
AT3G25710.1	KRH27971	AT3G48150.1	21798944
AT3G25710.1	KRH29310	AT3G48150.1	21798944
AT3G25710.1	KRH77487	AT3G48150.1	21798944
AT3G25710.1	KRH03966	AT3G48550.1	21798944
AT3G25710.1	KRH57236	AT3G48550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34774	Soybean	nucleus	95.39	93.77
VIT_01s0011g02940.t01	Wine grape	nucleus	71.76	71.35
GSMUA_Achr1P21280_001	Banana	nucleus	38.9	67.84
GSMUA_Achr11P...	Banana	nucleus	38.62	67.34
Solyc04g006990.2.1	Tomato	nucleus	40.92	67.3
KRH75497	Soybean	nucleus	72.33	66.76
Solyc05g009880.2.1	Tomato	nucleus	57.64	66.67
KRH70619	Soybean	nucleus	70.32	65.59
GSMUA_Achr6P30610_001	Banana	nucleus	35.73	64.92
PGSC0003DMT400002155	Potato	nucleus	57.93	64.42
GSMUA_Achr7P07280_001	Banana	nucleus	34.58	62.18
PGSC0003DMT400019294	Potato	nucleus	44.96	59.77
Bra025158.1-P	Field mustard	nucleus	37.46	58.3
CDX95989	Canola	nucleus	55.33	54.39
CDY33592	Canola	nucleus	55.33	54.24
Bra004338.1-P	Field mustard	nucleus	55.33	54.24
CDY04259	Canola	nucleus	54.47	53.39
AT1G68810.1	Thale cress	nucleus	56.48	53.26
Bra004015.1-P	Field mustard	nucleus	54.18	53.26
CDY07364	Canola	nucleus	54.18	53.26
CDY13580	Canola	nucleus	47.84	49.55
AT3G25710.1	Thale cress	nucleus	48.99	49.42
CDX83546	Canola	nucleus	47.55	49.25
CDX99756	Canola	nucleus	47.26	49.25
Bra026510.1-P	Field mustard	nucleus	46.69	48.36
Zm00001d028504_P001	Maize	nucleus	49.86	44.25
HORVU4Hr1G061760.1	Barley	nucleus	51.01	44.03
TraesCS4D01G217700.1	Wheat	nucleus	51.3	43.84
TraesCS4B01G217400.1	Wheat	nucleus	51.3	43.84
KRH66750	Soybean	plastid	31.12	43.37
TraesCS4A01G087000.1	Wheat	nucleus	50.72	43.35
Os03t0260600-01	Rice	nucleus	50.43	42.79
KRH54953	Soybean	nucleus	30.55	41.9
KRG95083	Soybean	nucleus	30.26	41.83
TraesCS5A01G230500.1	Wheat	nucleus	38.9	40.3
TraesCS5B01G229000.1	Wheat	nucleus	38.62	40.12
OQU92884	Sorghum	nucleus	51.01	39.78
TraesCS5D01G237300.1	Wheat	nucleus	38.62	39.76
Os08t0432800-01	Rice	nucleus	39.48	39.71
Zm00001d032213_P001	Maize	nucleus	39.77	39.09
Zm00001d005740_P001	Maize	nucleus	38.04	37.93
HORVU5Hr1G066530.2	Barley	cytosol, nucleus	39.48	37.33
EER98886	Sorghum	nucleus	37.75	37.11
EES15038	Sorghum	nucleus	41.79	36.99
Zm00001d050394_P001	Maize	nucleus	39.19	36.76
Os09t0410700-00	Rice	nucleus	38.33	36.64
Zm00001d047878_P001	Maize	nucleus	44.38	36.07
KRH50172	Soybean	nucleus	27.67	35.16
KRH71297	Soybean	nucleus	27.38	35.06
KRH16843	Soybean	cytosol	22.77	32.92
KRH22294	Soybean	nucleus	23.05	32.13
KRH14931	Soybean	nucleus, plastid	24.21	31.82
KRH27035	Soybean	nucleus	22.77	31.73
KRG97707	Soybean	nucleus	24.5	30.91
KRH25720	Soybean	extracellular, nucleus	22.77	30.62
KRH55806	Soybean	nucleus	22.77	30.5
KRH31167	Soybean	nucleus	24.5	30.36
KRH72457	Soybean	nucleus	22.19	30.32
KRH69661	Soybean	mitochondrion	17.87	29.25
KRH73206	Soybean	golgi, nucleus	24.5	28.91

Protein Annotations

EntrezGene:100785826	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02012723	EMBL:BT095885	UniProt:C6TE65
EnsemblPlantsGene:GLYMA_20G185500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	ProteinID:KRG92010.1	ProteinID:KRG92011.1	ProteinID:KRG92012.1	EnsemblPlants:KRG92013
ProteinID:KRG92013	ProteinID:KRG92013.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF77
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0001B16A19	InterPro:bHLH_dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:+:42399699..42403283

Molecular Weight (calculated)

38891.8 Da

IEP (calculated)

6.661

GRAVY (calculated)

-0.663

Length

347 amino acids

Sequence
(BLAST)

001: MIQEDQGQCS SQAINNYHQA YQEQLLLQQQ MQQQQQQQQQ NNDIFGGGLN MYPGGEVSQI MHHHHHQPWS MTMPHHHHHH HQVHDPFLVP PQTSPYASLF
101: NRRGPSLQFA YDHGSSSDHL RIISESFVGP VVQPGSAPFG LQTELAKMTA QEIMEAKALA ASKSHSEAER RRRERINNHL AKLRSLLPST TKTDKASLLA
201: EVIQHVKELK RQTSLIAETS PVPTEADELT VVDEADEDGN SVIKASLCCE DRSDLFPELI KTLKALRLRT LKAEITTLGG RVKNVLFITG EETDSSSSED
301: HSQQQQQCCI SSIQEALKAV MEKSVGDHHE SASANIKRQR TNIISMS

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.