Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004338.1-P | Field mustard | nucleus | 88.04 | 91.53 |
| CDX95989 | Canola | nucleus | 87.77 | 91.5 |
| CDY33592 | Canola | nucleus | 87.5 | 90.96 |
| Bra004015.1-P | Field mustard | nucleus | 84.51 | 88.1 |
| CDY07364 | Canola | nucleus | 84.51 | 88.1 |
| CDY04259 | Canola | nucleus | 83.97 | 87.29 |
| Solyc04g006990.2.1 | Tomato | nucleus | 37.77 | 65.88 |
| GSMUA_Achr6P30610_001 | Banana | nucleus | 33.7 | 64.92 |
| VIT_01s0011g02940.t01 | Wine grape | nucleus | 58.7 | 61.89 |
| GSMUA_Achr1P21280_001 | Banana | nucleus | 33.15 | 61.31 |
| Solyc05g009880.2.1 | Tomato | nucleus | 49.73 | 61.0 |
| GSMUA_Achr11P... | Banana | nucleus | 32.88 | 60.8 |
| GSMUA_Achr7P07280_001 | Banana | nucleus | 31.79 | 60.62 |
| PGSC0003DMT400002155 | Potato | nucleus | 50.54 | 59.62 |
| PGSC0003DMT400019294 | Potato | nucleus | 40.22 | 56.7 |
| KRH34774 | Soybean | nucleus | 54.35 | 56.66 |
| KRG92013 | Soybean | nucleus | 53.26 | 56.48 |
| KRH70619 | Soybean | nucleus | 55.16 | 54.57 |
| KRH75497 | Soybean | nucleus | 55.71 | 54.52 |
| AT3G25710.1 | Thale cress | nucleus | 46.47 | 49.71 |
| TraesCS5D01G237300.1 | Wheat | nucleus | 38.04 | 41.54 |
| TraesCS5B01G229000.1 | Wheat | nucleus | 37.5 | 41.32 |
| HORVU4Hr1G061760.1 | Barley | nucleus | 45.11 | 41.29 |
| TraesCS5A01G230500.1 | Wheat | nucleus | 37.5 | 41.19 |
| TraesCS4D01G217700.1 | Wheat | nucleus | 45.11 | 40.89 |
| Os03t0260600-01 | Rice | nucleus | 45.38 | 40.83 |
| TraesCS4A01G087000.1 | Wheat | nucleus | 44.57 | 40.39 |
| TraesCS4B01G217400.1 | Wheat | nucleus | 44.57 | 40.39 |
| Os08t0432800-01 | Rice | nucleus | 36.96 | 39.42 |
| Zm00001d028504_P001 | Maize | nucleus | 41.85 | 39.39 |
| AT3G56770.1 | Thale cress | nucleus | 24.18 | 38.7 |
| HORVU5Hr1G066530.2 | Barley | cytosol, nucleus | 38.32 | 38.42 |
| Zm00001d032213_P001 | Maize | nucleus | 36.68 | 38.24 |
| EER98886 | Sorghum | nucleus | 35.87 | 37.39 |
| Zm00001d050394_P001 | Maize | nucleus | 37.5 | 37.3 |
| Os09t0410700-00 | Rice | nucleus | 36.68 | 37.19 |
| AT2G41130.1 | Thale cress | nucleus | 25.54 | 37.15 |
| Zm00001d005740_P001 | Maize | nucleus | 35.05 | 37.07 |
| EES15038 | Sorghum | nucleus | 38.86 | 36.48 |
| OQU92884 | Sorghum | nucleus | 43.75 | 36.18 |
| Zm00001d047878_P001 | Maize | nucleus | 41.03 | 35.36 |
| AT2G40200.1 | Thale cress | nucleus | 19.29 | 27.95 |
| AT4G38070.1 | Thale cress | plastid | 17.39 | 25.0 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:843213 | ProteinID:AAG51581.1 | ProteinID:AAG52041.1 | ProteinID:AEE34842.1 |
| ArrayExpress:AT1G68810 | EnsemblPlantsGene:AT1G68810 | RefSeq:AT1G68810 | TAIR:AT1G68810 | RefSeq:AT1G68810-TAIR-G | EnsemblPlants:AT1G68810.1 |
| TAIR:AT1G68810.1 | EMBL:AY072161 | EMBL:AY122983 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | RefSeq:NP_564944.1 | PFAM:PF00010 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF77 | UniProt:Q9S7Y1 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI00000A8FF0 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
Coordinates
chr1:+:25861094..25863534
Molecular Weight (calculated)
40827.5 Da
IEP (calculated)
5.413
GRAVY (calculated)
-0.646
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.