Factsheet for AT2G41130.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23874	Canola	nucleus	88.14	94.09
CDX79957	Canola	nucleus	92.09	93.2
Bra016951.1-P	Field mustard	nucleus	93.28	92.91
CDY06944	Canola	nucleus	93.28	92.91
CDY57584	Canola	nucleus	93.28	92.91
Bra004599.1-P	Field mustard	nucleus	91.7	92.8
CDY22504	Canola	nucleus	85.38	88.89
AT3G56770.1	Thale cress	nucleus	66.01	72.61
KRH66750	Soybean	plastid	55.73	56.63
KRG95083	Soybean	nucleus	55.73	56.18
VIT_08s0040g01240.t01	Wine grape	nucleus	52.96	56.07
KRH54953	Soybean	nucleus	55.73	55.73
GSMUA_Achr8P23980_001	Banana	nucleus	41.11	45.81
PGSC0003DMT400021599	Potato	nucleus	47.43	45.8
Solyc10g078380.1.1	Tomato	nucleus	46.25	44.83
Zm00001d034596_P001	Maize	nucleus	38.74	42.79
TraesCS5D01G479100.1	Wheat	nucleus	41.5	41.83
TraesCS5A01G466300.1	Wheat	plastid	40.71	41.2
TraesCS5B01G478000.1	Wheat	nucleus	40.71	41.04
EER93220	Sorghum	nucleus	42.69	40.45
Os03t0811400-00	Rice	nucleus	41.9	39.55
GSMUA_Achr7P21370_001	Banana	nucleus	38.34	32.99
AT2G40200.1	Thale cress	nucleus	27.67	27.56
AT1G68810.1	Thale cress	nucleus	37.15	25.54
AT3G25710.1	Thale cress	nucleus	32.81	24.13
AT4G38070.1	Thale cress	plastid	20.55	20.31

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:818712	UniProt:A0A178VRM6	ProteinID:AAD11998.1	ProteinID:AEC09935.1
EMBL:AK119059	ArrayExpress:AT2G41130	EnsemblPlantsGene:AT2G41130	RefSeq:AT2G41130	TAIR:AT2G41130	RefSeq:AT2G41130-TAIR-G
EnsemblPlants:AT2G41130.1	TAIR:AT2G41130.1	EMBL:AY074639	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536	GO:GO:0009628
GO:GO:0009941	GO:GO:0009987	GO:GO:0042538	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	RefSeq:NP_181646.1	UniProt:O80674	ProteinID:OAP09009.1	PFAM:PF00010	PO:PO:0000293
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF158	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00000AC03B
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BHLH106Transcription factor bHLH106 [Source:UniProtKB/Swiss-Prot;Acc:O80674]

Coordinates

chr2:+:17143157..17145283

Molecular Weight (calculated)

27979.5 Da

IEP (calculated)

7.916

GRAVY (calculated)

-0.415

Length

253 amino acids

Sequence
(BLAST)

001: MQPETSDQML YSFLAGNEVG GGGYCVSGDY MTTMQSLCGS SSSTSSYYPL AISGIGETMA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.