Factsheet for VIT_08s0040g01240.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66750	Soybean	plastid	60.25	57.83
CDY23874	Canola	nucleus	55.65	56.12
KRG95083	Soybean	nucleus	58.58	55.78
CDX79957	Canola	nucleus	57.32	54.8
KRH54953	Soybean	nucleus	57.74	54.55
Bra004599.1-P	Field mustard	nucleus	56.9	54.4
Bra016951.1-P	Field mustard	nucleus	57.32	53.94
CDY06944	Canola	nucleus	57.32	53.94
CDY57584	Canola	nucleus	56.9	53.54
AT2G41130.1	Thale cress	nucleus	56.07	52.96
CDY22504	Canola	nucleus	53.56	52.67
AT3G56770.1	Thale cress	nucleus	47.7	49.57
PGSC0003DMT400021599	Potato	nucleus	52.3	47.71
GSMUA_Achr8P23980_001	Banana	nucleus	44.77	47.14
Solyc10g078380.1.1	Tomato	nucleus	51.46	47.13
CDX76011	Canola	nucleus	44.77	46.12
Bra014672.1-P	Field mustard	nucleus	44.77	46.12
Zm00001d034596_P001	Maize	nucleus	37.66	39.3
Os03t0811400-00	Rice	nucleus	43.1	38.43
TraesCS5B01G478000.1	Wheat	nucleus	40.17	38.25
TraesCS5D01G479100.1	Wheat	nucleus	40.17	38.25
TraesCS5A01G466300.1	Wheat	plastid	39.75	38.0
EER93220	Sorghum	nucleus	41.84	37.45
GSMUA_Achr7P21370_001	Banana	nucleus	43.1	35.03
VIT_10s0003g01160.t01	Wine grape	nucleus	22.59	33.96
VIT_01s0011g02940.t01	Wine grape	nucleus	45.61	31.23
VIT_18s0001g07410.t01	Wine grape	nucleus	27.62	29.86
VIT_14s0068g01580.t01	Wine grape	nucleus	31.8	28.9
VIT_12s0028g02350.t01	Wine grape	nucleus	30.96	28.57
VIT_13s0067g01350.t01	Wine grape	nucleus	31.38	25.25

Protein Annotations

EntrezGene:100241466	wikigene:100241466	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CBI32785	ProteinID:CBI32785.3
UniProt:D7TQR5	EMBL:FN596008	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100241466	wikigene:LOC100241466	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF158	SMART:SM00353	SUPFAM:SSF47459	TIGR:TC61618
UniParc:UPI00015CAF86	ArrayExpress:VIT_08s0040g01240	EnsemblPlantsGene:VIT_08s0040g01240	EnsemblPlants:VIT_08s0040g01240.t01	unigene:Vvi.16696	RefSeq:XP_002282625
RefSeq:XP_002282625.1	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:+:12276225..12277964

Molecular Weight (calculated)

26494.3 Da

IEP (calculated)

6.664

GRAVY (calculated)

-0.468

Length

239 amino acids

Sequence
(BLAST)

001: MQPENTPEGS EFCRFLAGNV LSDVGWYGFP GNCDFPAIQS FCSSSFYPSE VSGIADVPQS RALTASINHK EAEKRRRERI NSHLDKLRSL LPCSSKTDKA
101: SLLAKVIQRV KELKEQTSEI TQLETLPSET DEINVILSGD YSDDGKSIFK ASLCCEDRTE LLPELIEILK SLRLKTLKAE MASLGGRIRN ILVVSGDGDH
201: SDESVHSLRD ALKTLVDHSS SSGRSKRRRF GVDCRKVSD

Best Arabidopsis Sequence Match ( AT2G41130.1 )
(BLAST)

001: MQPETSDQML YSFLAGNEVG GGGYCVSGDY MTTMQSLCGS SSSTSSYYPL AISGIGETMA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV

Arabidopsis Description

BHLH106Transcription factor bHLH106 [Source:UniProtKB/Swiss-Prot;Acc:O80674]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.