CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014672.1-P	Field mustard	nucleus	99.57	99.57
AT3G56770.1	Thale cress	nucleus	72.84	73.48
CDY23874	Canola	nucleus	64.66	63.29
CDX79957	Canola	nucleus	65.95	61.2
CDY22504	Canola	nucleus	63.79	60.91
CDY06944	Canola	nucleus	65.52	59.84
CDY57584	Canola	nucleus	65.52	59.84
KRH54953	Soybean	nucleus	51.72	47.43
KRH66750	Soybean	plastid	50.86	47.39
KRG95083	Soybean	nucleus	50.43	46.61
VIT_08s0040g01240.t01	Wine grape	nucleus	46.12	44.77
GSMUA_Achr8P23980_001	Banana	nucleus	37.5	38.33
PGSC0003DMT400021599	Potato	nucleus	43.1	38.17
Solyc10g078380.1.1	Tomato	nucleus	42.24	37.55
Zm00001d034596_P001	Maize	nucleus	34.05	34.5
TraesCS5D01G479100.1	Wheat	nucleus	36.64	33.86
TraesCS5A01G466300.1	Wheat	plastid	36.21	33.6
TraesCS5B01G478000.1	Wheat	nucleus	35.78	33.07
Os03t0811400-00	Rice	nucleus	37.5	32.46
EER93220	Sorghum	nucleus	37.07	32.21
GSMUA_Achr7P21370_001	Banana	nucleus	37.5	29.59
CDX90384	Canola	cytosol	19.83	28.22
CDY07615	Canola	nucleus	28.02	27.9
CDX93211	Canola	nucleus, plastid	30.17	27.67
CDY24921	Canola	nucleus	28.45	27.5
CDY07066	Canola	nucleus, plastid	29.74	27.27
CDX95989	Canola	nucleus	36.64	24.08
CDY33592	Canola	nucleus	36.64	24.01
CDY07364	Canola	nucleus	34.91	22.95
CDY04259	Canola	nucleus	34.91	22.88
CDX83546	Canola	nucleus	31.9	22.09
CDY13580	Canola	nucleus	31.47	21.79
CDX99756	Canola	nucleus	30.6	21.32
CDY52514	Canola	cytosol	21.55	3.47

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078CFU6	EnsemblPlants:CDX76011	ProteinID:CDX76011	ProteinID:CDX76011.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0009719	GO:GO:0010200
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00126232001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF158	SMART:SM00353	SUPFAM:SSF47459	SUPFAM:SSF55021
UniParc:UPI0004EDEF41	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

BnaA04g02750DPutative transcription factor bHLH107 [Source:Projected from Arabidopsis thaliana (AT3G56770) UniProtKB/Swiss-Prot;Acc:Q9LET0]

Coordinates

chrLK031806:-:203335..204770

Molecular Weight (calculated)

26371.4 Da

IEP (calculated)

8.213

GRAVY (calculated)

-0.620

Length

232 amino acids

Sequence
(BLAST)

001: MQPEISDQIL YSFLIGGSCA SSTTTTTTRS SFYPFAMEDT SSQDKALATT LRKHREGERM RRERINSSLN KLRNLLSCNP KTDKATLLAK VVQRVNELKQ
101: QTLEISNENV PSETDEISVL NFENCSNDDG RIIFKVSFCC EDRPDLMQDL VETLKSLQME TLYAYMTTIG GRTRNDLVVV GNKEQHSVES VKLLQNAFES
201: LLERSNQSVM MGHGGGRERS KRRRPLDHIK RV

Best Arabidopsis Sequence Match ( AT3G56770.1 )
(BLAST)

001: MQPEVSDQIF YAFLTGGLCA SSTSTTVTSS SDPFATVYED KALASLRNHK EAERKRRARI NSHLNKLRKL LSCNSKTDKS TLLAKVVQRV KELKQQTLEI
101: TDETIPSETD EISVLNIEDC SRGDDRRIIF KVSFCCEDRP ELLKDLMETL KSLQMETLFA DMTTVGGRTR NVLVVAADKE HHGVQSVNFL QNALKSLLER
201: SSKSVMVGHG GGGGEERLKR RRALDHIIMV

Arabidopsis Description

BHLH107Putative transcription factor bHLH107 [Source:UniProtKB/Swiss-Prot;Acc:Q9LET0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.