Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76011 | Canola | nucleus | 73.48 | 72.84 |
| Bra014672.1-P | Field mustard | nucleus | 73.04 | 72.41 |
| AT2G41130.1 | Thale cress | nucleus | 72.61 | 66.01 |
| KRH66750 | Soybean | plastid | 54.78 | 50.6 |
| KRH54953 | Soybean | nucleus | 55.22 | 50.2 |
| KRG95083 | Soybean | nucleus | 54.35 | 49.8 |
| VIT_08s0040g01240.t01 | Wine grape | nucleus | 49.57 | 47.7 |
| PGSC0003DMT400021599 | Potato | nucleus | 46.96 | 41.22 |
| Solyc10g078380.1.1 | Tomato | nucleus | 46.09 | 40.61 |
| GSMUA_Achr8P23980_001 | Banana | nucleus | 40.0 | 40.53 |
| Zm00001d034596_P001 | Maize | nucleus | 36.09 | 36.24 |
| TraesCS5D01G479100.1 | Wheat | nucleus | 37.83 | 34.66 |
| TraesCS5A01G466300.1 | Wheat | plastid | 37.39 | 34.4 |
| TraesCS5B01G478000.1 | Wheat | nucleus | 36.96 | 33.86 |
| EER93220 | Sorghum | nucleus | 39.13 | 33.71 |
| Os03t0811400-00 | Rice | nucleus | 38.26 | 32.84 |
| GSMUA_Achr7P21370_001 | Banana | nucleus | 38.7 | 30.27 |
| AT2G40200.1 | Thale cress | nucleus | 32.61 | 29.53 |
| AT1G68810.1 | Thale cress | nucleus | 38.7 | 24.18 |
| AT3G25710.1 | Thale cress | nucleus | 34.35 | 22.97 |
| AT4G38070.1 | Thale cress | plastid | 21.3 | 19.14 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:824844 | ProteinID:AEE79563.1 | ArrayExpress:AT3G56770 | EnsemblPlantsGene:AT3G56770 |
| RefSeq:AT3G56770 | TAIR:AT3G56770 | RefSeq:AT3G56770-TAIR-G | EnsemblPlants:AT3G56770.1 | TAIR:AT3G56770.1 | ProteinID:CAC00740.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009987 |
| GO:GO:0010200 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_191236.1 |
| PFAM:PF00010 | PO:PO:0000293 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF158 | UniProt:Q9LET0 |
| SMART:SM00353 | SUPFAM:SSF47459 | SUPFAM:SSF55021 | UniParc:UPI000009EAA4 | InterPro:bHLH_dom | SEG:seg |
Description
BHLH107Putative transcription factor bHLH107 [Source:UniProtKB/Swiss-Prot;Acc:Q9LET0]
Coordinates
chr3:-:21028902..21030754
Molecular Weight (calculated)
25755.9 Da
IEP (calculated)
8.495
GRAVY (calculated)
-0.416
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPEVSDQIF YAFLTGGLCA SSTSTTVTSS SDPFATVYED KALASLRNHK EAERKRRARI NSHLNKLRKL LSCNSKTDKS TLLAKVVQRV KELKQQTLEI
101: TDETIPSETD EISVLNIEDC SRGDDRRIIF KVSFCCEDRP ELLKDLMETL KSLQMETLFA DMTTVGGRTR NVLVVAADKE HHGVQSVNFL QNALKSLLER
201: SSKSVMVGHG GGGGEERLKR RRALDHIIMV
101: TDETIPSETD EISVLNIEDC SRGDDRRIIF KVSFCCEDRP ELLKDLMETL KSLQMETLFA DMTTVGGRTR NVLVVAADKE HHGVQSVNFL QNALKSLLER
201: SSKSVMVGHG GGGGEERLKR RRALDHIIMV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.