Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P23980_001 | Banana | nucleus | 60.54 | 78.41 |
| Zm00001d034596_P001 | Maize | nucleus | 39.8 | 51.09 |
| TraesCS5B01G478000.1 | Wheat | nucleus | 42.52 | 49.8 |
| TraesCS5A01G466300.1 | Wheat | plastid | 41.84 | 49.2 |
| TraesCS5D01G479100.1 | Wheat | nucleus | 41.84 | 49.0 |
| Os03t0811400-00 | Rice | nucleus | 44.56 | 48.88 |
| EER93220 | Sorghum | nucleus | 44.22 | 48.69 |
| GSMUA_Achr6P30610_001 | Banana | nucleus | 28.23 | 43.46 |
| VIT_08s0040g01240.t01 | Wine grape | nucleus | 35.03 | 43.1 |
| KRH66750 | Soybean | plastid | 36.39 | 42.97 |
| CDY23874 | Canola | nucleus | 34.01 | 42.19 |
| KRG95083 | Soybean | nucleus | 35.71 | 41.83 |
| CDY22504 | Canola | nucleus | 34.01 | 41.15 |
| GSMUA_Achr11P... | Banana | nucleus | 27.55 | 40.7 |
| CDX79957 | Canola | nucleus | 34.35 | 40.4 |
| KRH54953 | Soybean | nucleus | 34.69 | 40.32 |
| Bra004599.1-P | Field mustard | nucleus | 34.01 | 40.0 |
| CDY57584 | Canola | nucleus | 34.35 | 39.76 |
| CDY06944 | Canola | nucleus | 34.35 | 39.76 |
| Bra016951.1-P | Field mustard | nucleus | 34.35 | 39.76 |
| GSMUA_Achr1P21280_001 | Banana | nucleus | 26.87 | 39.7 |
| GSMUA_Achr7P07280_001 | Banana | nucleus | 25.51 | 38.86 |
| AT3G56770.1 | Thale cress | nucleus | 30.27 | 38.7 |
| AT2G41130.1 | Thale cress | nucleus | 32.99 | 38.34 |
| CDX76011 | Canola | nucleus | 29.59 | 37.5 |
| Bra014672.1-P | Field mustard | nucleus | 29.59 | 37.5 |
| PGSC0003DMT400021599 | Potato | nucleus | 32.99 | 37.02 |
| Solyc10g078380.1.1 | Tomato | nucleus | 32.31 | 36.4 |
| GSMUA_Achr3P06780_001 | Banana | cytosol | 22.79 | 32.68 |
| GSMUA_Achr7P10740_001 | Banana | nucleus | 26.19 | 30.68 |
| GSMUA_Achr9P15140_001 | Banana | plastid | 23.81 | 30.43 |
| GSMUA_Achr5P29390_001 | Banana | nucleus | 23.81 | 30.04 |
| GSMUA_Achr3P03510_001 | Banana | nucleus | 24.49 | 29.88 |
| GSMUA_Achr10P... | Banana | nucleus | 25.51 | 29.3 |
| GSMUA_Achr2P20040_001 | Banana | nucleus | 24.15 | 28.51 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P21370_001 | EnsemblPlants:GSMUA_Achr7T21370_001 | EnsemblPlantsGene:GSMUA_Achr7G21370_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF158 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000296EFE3 | UniProt:M0TJH4 | MapMan:15.5.32 | : | : |
Description
Putative transcription factor bHLH107 [Source:GMGC_GENE;Acc:GSMUA_Achr7G21370_001]
Coordinates
chr7:+:24163650..24165172
Molecular Weight (calculated)
33686.5 Da
IEP (calculated)
4.615
GRAVY (calculated)
-0.411
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAGRAGRSD LQAEMLSGLP EYFMASFYPH MEMEMEMETE MAMRDEAVDA TRMDRALVAS RNHREAERRR RERIKSHLDR LRTILACDPK VSSLVSWTTF
101: PLLQLQEDIT TKASLGMLTF FWIFPFLDFC IDQIPTDKAS LLAKVVERMK DLKQRAEEIT EAQCFPSETD EIVVLPSSAS ISGQRSVFEA SFCCEDRSDL
201: LPELIDTLRS LRLKTLRAEI ATLGGRVRNV LILAKENEAS EEEEEEEEEE EDEPGGAFLR DALQALVDRP HPAERCKRRR LKKTIMECPV DMCC
101: PLLQLQEDIT TKASLGMLTF FWIFPFLDFC IDQIPTDKAS LLAKVVERMK DLKQRAEEIT EAQCFPSETD EIVVLPSSAS ISGQRSVFEA SFCCEDRSDL
201: LPELIDTLRS LRLKTLRAEI ATLGGRVRNV LILAKENEAS EEEEEEEEEE EDEPGGAFLR DALQALVDRP HPAERCKRRR LKKTIMECPV DMCC
001: MQPEVSDQIF YAFLTGGLCA SSTSTTVTSS SDPFATVYED KALASLRNHK EAERKRRARI NSHLNKLRKL LSCNSKTDKS TLLAKVVQRV KELKQQTLEI
101: TDETIPSETD EISVLNIEDC SRGDDRRIIF KVSFCCEDRP ELLKDLMETL KSLQMETLFA DMTTVGGRTR NVLVVAADKE HHGVQSVNFL QNALKSLLER
201: SSKSVMVGHG GGGGEERLKR RRALDHIIMV
101: TDETIPSETD EISVLNIEDC SRGDDRRIIF KVSFCCEDRP ELLKDLMETL KSLQMETLFA DMTTVGGRTR NVLVVAADKE HHGVQSVNFL QNALKSLLER
201: SSKSVMVGHG GGGGEERLKR RRALDHIIMV
Arabidopsis Description
BHLH107Putative transcription factor bHLH107 [Source:UniProtKB/Swiss-Prot;Acc:Q9LET0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.