Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P07280_001 | Banana | nucleus | 83.25 | 82.38 |
| GSMUA_Achr1P21280_001 | Banana | nucleus | 72.25 | 69.35 |
| GSMUA_Achr11P... | Banana | nucleus | 70.16 | 67.34 |
| Solyc04g006990.2.1 | Tomato | nucleus | 64.92 | 58.77 |
| Bra025158.1-P | Field mustard | nucleus | 63.87 | 54.71 |
| PGSC0003DMT400019294 | Potato | nucleus | 63.87 | 46.74 |
| Solyc05g009880.2.1 | Tomato | nucleus | 68.59 | 43.67 |
| PGSC0003DMT400002155 | Potato | nucleus | 68.59 | 41.99 |
| VIT_01s0011g02940.t01 | Wine grape | nucleus | 73.82 | 40.4 |
| GSMUA_Achr8P23980_001 | Banana | nucleus | 44.5 | 37.44 |
| CDX99756 | Canola | nucleus | 64.4 | 36.94 |
| Bra026510.1-P | Field mustard | nucleus | 64.4 | 36.72 |
| GSMUA_Achr7P10740_001 | Banana | nucleus | 48.17 | 36.65 |
| AT3G25710.1 | Thale cress | nucleus | 65.97 | 36.63 |
| CDY13580 | Canola | nucleus | 63.87 | 36.42 |
| CDX83546 | Canola | nucleus | 63.35 | 36.12 |
| GSMUA_Achr3P03510_001 | Banana | nucleus | 45.55 | 36.1 |
| GSMUA_Achr2P20040_001 | Banana | nucleus | 46.6 | 35.74 |
| KRG92013 | Soybean | nucleus | 64.92 | 35.73 |
| KRH75497 | Soybean | nucleus | 70.16 | 35.64 |
| KRH70619 | Soybean | nucleus | 69.11 | 35.48 |
| HORVU4Hr1G061760.1 | Barley | nucleus | 74.35 | 35.32 |
| TraesCS5D01G237300.1 | Wheat | nucleus | 62.3 | 35.31 |
| Zm00001d028504_P001 | Maize | nucleus | 72.25 | 35.29 |
| TraesCS5A01G230500.1 | Wheat | nucleus | 61.78 | 35.22 |
| KRH34774 | Soybean | nucleus | 64.92 | 35.13 |
| GSMUA_Achr3P06780_001 | Banana | cytosol | 37.7 | 35.12 |
| TraesCS5B01G229000.1 | Wheat | nucleus | 61.26 | 35.03 |
| TraesCS4B01G217400.1 | Wheat | nucleus | 74.35 | 34.98 |
| TraesCS4A01G087000.1 | Wheat | nucleus | 74.35 | 34.98 |
| TraesCS4D01G217700.1 | Wheat | nucleus | 74.35 | 34.98 |
| Os03t0260600-01 | Rice | nucleus | 74.35 | 34.72 |
| CDY07364 | Canola | nucleus | 63.87 | 34.56 |
| Bra004015.1-P | Field mustard | nucleus | 63.87 | 34.56 |
| CDX95989 | Canola | nucleus | 63.87 | 34.56 |
| Bra004338.1-P | Field mustard | nucleus | 63.87 | 34.46 |
| CDY33592 | Canola | nucleus | 63.87 | 34.46 |
| GSMUA_Achr10P... | Banana | nucleus | 46.07 | 34.38 |
| Os08t0432800-01 | Rice | nucleus | 61.78 | 34.2 |
| AT1G68810.1 | Thale cress | nucleus | 64.92 | 33.7 |
| CDY04259 | Canola | nucleus | 62.3 | 33.62 |
| Os09t0410700-00 | Rice | nucleus | 63.35 | 33.33 |
| OQU92884 | Sorghum | nucleus | 75.92 | 32.58 |
| Zm00001d005740_P001 | Maize | nucleus | 59.16 | 32.47 |
| HORVU5Hr1G066530.2 | Barley | cytosol, nucleus | 62.3 | 32.43 |
| Zm00001d032213_P001 | Maize | nucleus | 59.69 | 32.29 |
| EER98886 | Sorghum | nucleus | 59.69 | 32.29 |
| Zm00001d050394_P001 | Maize | nucleus | 60.73 | 31.35 |
| GSMUA_Achr9P15140_001 | Banana | plastid | 37.17 | 30.87 |
| EES15038 | Sorghum | nucleus | 61.26 | 29.85 |
| GSMUA_Achr5P29390_001 | Banana | nucleus | 36.13 | 29.61 |
| Zm00001d047878_P001 | Maize | nucleus | 63.87 | 28.57 |
| GSMUA_Achr7P21370_001 | Banana | nucleus | 43.46 | 28.23 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | InterPro:ACT_dom | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr6G30610_001 | EnsemblPlants:GSMUA_Achr6P30610_001 | EnsemblPlants:GSMUA_Achr6T30610_001 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR002912 | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M0TBK6 | PFAM:PF00010 | PFscan:PS50888 |
| PFscan:PS51671 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF77 | SMART:SM00353 | SUPFAM:SSF47459 | SUPFAM:SSF55021 |
| UniParc:UPI0002951CC2 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
Transcription factor bHLH30 [Source:GMGC_GENE;Acc:GSMUA_Achr6G30610_001]
Coordinates
chr6:+:30561833..30563063
Molecular Weight (calculated)
21097.1 Da
IEP (calculated)
6.794
GRAVY (calculated)
-0.530
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAKALAASK SHSEAERRRR ERINGHLAKL RSMLPNTTKT DKASLLAEVI QHVKELKRQT TEITEESPLP TEVDELTVDS TCDEDGKFIV RASLCCEDRP
101: DLLPDLINAL KALRLRVLKA EITTVGGRVK NVLAISEEQN SGDDDHQRLV TAIQEALKAV VEQTAKHDPS AGGTKRQRTA SFPTIIEHSS I
101: DLLPDLINAL KALRLRVLKA EITTVGGRVK NVLAISEEQN SGDDDHQRLV TAIQEALKAV VEQTAKHDPS AGGTKRQRTA SFPTIIEHSS I
001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
Arabidopsis Description
BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.