Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d005740_P001 | Maize | nucleus | 84.42 | 85.63 |
| TraesCS5A01G230500.1 | Wheat | nucleus | 71.1 | 74.93 |
| TraesCS5D01G237300.1 | Wheat | nucleus | 71.1 | 74.48 |
| TraesCS5B01G229000.1 | Wheat | nucleus | 70.25 | 74.25 |
| HORVU5Hr1G066530.2 | Barley | cytosol, nucleus | 68.84 | 66.21 |
| Os09t0410700-00 | Rice | nucleus | 67.42 | 65.56 |
| GSMUA_Achr6P30610_001 | Banana | nucleus | 32.29 | 59.69 |
| GSMUA_Achr7P07280_001 | Banana | nucleus | 32.01 | 58.55 |
| Solyc04g006990.2.1 | Tomato | nucleus | 31.73 | 53.08 |
| EES15038 | Sorghum | nucleus | 58.36 | 52.55 |
| Bra025158.1-P | Field mustard | nucleus | 31.44 | 49.78 |
| PGSC0003DMT400019294 | Potato | nucleus | 33.14 | 44.83 |
| Solyc05g009880.2.1 | Tomato | nucleus | 37.11 | 43.67 |
| PGSC0003DMT400002155 | Potato | nucleus | 36.83 | 41.67 |
| VIT_01s0011g02940.t01 | Wine grape | nucleus | 40.51 | 40.97 |
| KRG92013 | Soybean | nucleus | 37.11 | 37.75 |
| KRH70619 | Soybean | nucleus | 39.66 | 37.63 |
| CDY13580 | Canola | nucleus | 35.41 | 37.31 |
| CDX99756 | Canola | nucleus | 35.13 | 37.24 |
| KRH34774 | Soybean | nucleus | 37.11 | 37.11 |
| CDX83546 | Canola | nucleus | 35.13 | 37.01 |
| KRH75497 | Soybean | nucleus | 39.38 | 36.97 |
| Bra026510.1-P | Field mustard | nucleus | 34.84 | 36.72 |
| AT3G25710.1 | Thale cress | nucleus | 35.13 | 36.05 |
| CDX95989 | Canola | nucleus | 35.98 | 35.98 |
| CDY33592 | Canola | nucleus | 35.98 | 35.88 |
| Bra004338.1-P | Field mustard | nucleus | 35.98 | 35.88 |
| AT1G68810.1 | Thale cress | nucleus | 37.39 | 35.87 |
| CDY07364 | Canola | nucleus | 35.69 | 35.69 |
| Bra004015.1-P | Field mustard | nucleus | 35.69 | 35.69 |
| EER96881 | Sorghum | cytosol, nucleus, peroxisome, plastid | 22.38 | 35.11 |
| CDY04259 | Canola | nucleus | 35.13 | 35.03 |
| OQU92884 | Sorghum | nucleus | 42.49 | 33.71 |
| EES14023 | Sorghum | nucleus | 22.66 | 32.79 |
| EER93220 | Sorghum | nucleus | 24.36 | 32.21 |
| KXG31555 | Sorghum | nucleus | 23.51 | 30.74 |
| EES00272 | Sorghum | plastid | 20.11 | 29.34 |
| EES19097 | Sorghum | nucleus, plastid | 17.85 | 27.39 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:8055813 | UniProt:C5XC82 | EnsemblPlants:EER98886 | ProteinID:EER98886 |
| ProteinID:EER98886.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF98 |
| SMART:SM00353 | EnsemblPlantsGene:SORBI_3002G198500 | SUPFAM:SSF47459 | UniParc:UPI0001A83F6C | RefSeq:XP_002462365.1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:58844999..58847954
Molecular Weight (calculated)
36804.3 Da
IEP (calculated)
6.238
GRAVY (calculated)
-0.409
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MWEGGIVEHG SQEATHHQLL PWLGAAPFSE PAAVATGLGA AMGAYACGDG VGGLGLGHGG VFGFGFDAVP PPQQQQQRAA EGSGKAVVSG LLGSLQAELG
101: RMTAREMMDA KALAASRSHS EAERRRRQRI NGHLARLRSL LPNTTKTDKA SLLAEVLDHV KELKRQTSAM MMATAAVGGD DGGAGGRAHQ QLLPTEADEL
201: SVDAGADGAG RLVVRASLCC EDRPDLIPDI VRALAALGMR ARRAEITTLG GRVRSLLLIT AGSRGADQAG DGDGDDDDEE EEDGHRPANA PVHVDGERTA
301: SHRRHECIAS VQEALRGVMD RRTASSDTSS SGGGGGSIKR QRMNYGAQEQ CSV
101: RMTAREMMDA KALAASRSHS EAERRRRQRI NGHLARLRSL LPNTTKTDKA SLLAEVLDHV KELKRQTSAM MMATAAVGGD DGGAGGRAHQ QLLPTEADEL
201: SVDAGADGAG RLVVRASLCC EDRPDLIPDI VRALAALGMR ARRAEITTLG GRVRSLLLIT AGSRGADQAG DGDGDDDDEE EEDGHRPANA PVHVDGERTA
301: SHRRHECIAS VQEALRGVMD RRTASSDTSS SGGGGGSIKR QRMNYGAQEQ CSV
001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
Arabidopsis Description
BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.