CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
peroxisome 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005919_P001	Maize	nucleus	86.67	91.12
TraesCS5A01G245600.1	Wheat	nucleus	62.67	73.06
TraesCS5B01G243000.1	Wheat	nucleus	65.78	70.81
TraesCS5D01G252300.1	Wheat	nucleus	64.44	69.38
HORVU5Hr1G069580.1	Barley	nucleus	63.11	67.62
GSMUA_Achr3P06780_001	Banana	cytosol	52.89	58.05
EES14023	Sorghum	nucleus	59.11	54.51
GSMUA_Achr9P15140_001	Banana	plastid	54.22	53.04
VIT_18s0001g07410.t01	Wine grape	nucleus	37.78	38.46
KRH16843	Soybean	cytosol	36.89	34.58
CDX90384	Canola	cytosol	24.44	33.74
KRH72457	Soybean	nucleus	37.33	33.07
PGSC0003DMT400060615	Potato	cytosol	31.11	31.25
EES19097	Sorghum	nucleus, plastid	30.67	30.0
PGSC0003DMT400024185	Potato	nucleus	27.11	29.9
Solyc04g076240.1.1	Tomato	nucleus	26.67	29.27
EES00272	Sorghum	plastid	31.11	28.93
Bra010635.1-P	Field mustard	plastid	26.22	26.34
Solyc04g014360.2.1	Tomato	nucleus	31.56	26.2
KXG31555	Sorghum	nucleus	30.67	25.56
KRH69661	Soybean	mitochondrion	24.0	25.47
EER93220	Sorghum	nucleus	28.89	24.34
AT4G38070.1	Thale cress	plastid	26.67	23.44
EER98886	Sorghum	nucleus	35.11	22.38
EES15038	Sorghum	nucleus	35.11	20.15
OQU92884	Sorghum	nucleus	34.67	17.53
CDY52514	Canola	cytosol	26.22	4.1

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8083243	UniProt:C5X2Y6	EnsemblPlants:EER96881	ProteinID:EER96881
ProteinID:EER96881.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF185
SMART:SM00353	EnsemblPlantsGene:SORBI_3002G230000	SUPFAM:SSF47459	UniParc:UPI0001A8362B	RefSeq:XP_002460360.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:62132875..62133808

Molecular Weight (calculated)

23833.2 Da

IEP (calculated)

8.406

GRAVY (calculated)

-0.308

Length

225 amino acids

Sequence
(BLAST)

001: MVPVGSDEAA EVAVDGECSP PAATTTRSGT SRSHSEAERK RRQRINAHLA TLRTLLPAAS RMDKAALLGE VVRHVRELRG EADAAAAGVA VAVPGEGDEV
101: GVEEGQQHCF CHGGERERAA AAANTRRVRA WVCCADRPGL MSELGRAVRS VSARAVRAEI ATVGGRTRSV LELDVVGGHH DGEGTSTSSR PALQAALRAV
201: LLSREEMLGA ECYKRQRFSA HLARV

Best Arabidopsis Sequence Match ( AT4G38070.1 )
(BLAST)

001: MVLLHHVSLS HYQNSSSLFS SSSESILCLF LVLCVMQLEQ GMRPISRCYN PTAYSTTMGR SFFAGAATSS KLFSRGFSVT KPKSKTESKE VAAKKHSDAE
101: RRRRLRINSQ FATLRTILPN LVKQDKASVL GETVRYFNEL KKMVQDIPTT PSLEDNLRLD HCNNNRDLAR VVFSCSDREG LMSEVAESMK AVKAKAVRAE
201: IMTVGGRTKC ALFVQGVNGN EGLVKLKKSL KLVVNGKSSS EAKNNNNGGS LLIQQQ

Arabidopsis Description

BHLH131Transcription factor bHLH131 [Source:UniProtKB/Swiss-Prot;Acc:P0CB25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.