CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034596_P001	Maize	nucleus	79.4	92.58
TraesCS5A01G466300.1	Wheat	plastid	73.41	78.4
Os03t0811400-00	Rice	nucleus	78.28	77.99
TraesCS5D01G479100.1	Wheat	nucleus	73.03	77.69
TraesCS5B01G478000.1	Wheat	nucleus	72.66	77.29
GSMUA_Achr8P23980_001	Banana	nucleus	48.31	56.83
CDY23874	Canola	nucleus	40.45	45.57
GSMUA_Achr7P21370_001	Banana	nucleus	48.69	44.22
CDY22504	Canola	nucleus	40.07	44.03
CDX79957	Canola	nucleus	40.82	43.6
KRH54953	Soybean	nucleus	41.2	43.48
Bra004599.1-P	Field mustard	nucleus	40.45	43.2
AT2G41130.1	Thale cress	nucleus	40.45	42.69
KRH66750	Soybean	plastid	39.33	42.17
VIT_08s0040g01240.t01	Wine grape	nucleus	37.45	41.84
KRG95083	Soybean	nucleus	39.33	41.83
CDY57584	Canola	nucleus	39.7	41.73
CDY06944	Canola	nucleus	39.7	41.73
Bra016951.1-P	Field mustard	nucleus	39.7	41.73
AT3G56770.1	Thale cress	nucleus	33.71	39.13
PGSC0003DMT400021599	Potato	nucleus	37.45	38.17
Solyc10g078380.1.1	Tomato	nucleus	37.08	37.93
CDX76011	Canola	nucleus	32.21	37.07
Bra014672.1-P	Field mustard	nucleus	32.21	37.07
EES00272	Sorghum	plastid	26.59	29.34
EER96881	Sorghum	cytosol, nucleus, peroxisome, plastid	24.34	28.89
EES14023	Sorghum	nucleus	24.34	26.64
EES19097	Sorghum	nucleus, plastid	22.1	25.65
KXG31555	Sorghum	nucleus	25.47	25.19
EER98886	Sorghum	nucleus	32.21	24.36
EES15038	Sorghum	nucleus	34.46	23.47
OQU92884	Sorghum	nucleus	38.2	22.92

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8057082	UniProt:C5WW01	ncoils:Coil	EnsemblPlants:EER93220
ProteinID:EER93220	ProteinID:EER93220.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF158	SMART:SM00353	EnsemblPlantsGene:SORBI_3001G041500	SUPFAM:SSF47459	UniParc:UPI0001A829FA	RefSeq:XP_002466222.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:3093876..3095572

Molecular Weight (calculated)

27692.9 Da

IEP (calculated)

7.050

GRAVY (calculated)

-0.163

Length

267 amino acids

Sequence
(BLAST)

001: MFPAEVSALA AASGAGAGRQ AAGEAAGGGV LPMLPPFFMG SIWPASSEED EAAAAAAAAA AHDRALAASR NHREAEKRRR ERIKSHLDRL RNVLACDPKI
101: DKASLLAKAV ERVRDLKQRA AGVGEAAPAH LFPTEHDEIV VLASGSGAVF EASVCCDDRS DLLPDLIETL RALRLRTLRA EMATLGGRVR NVLVLARDVA
201: DGGVVVTGDD DGYGGRAADS VGATDGANGT GGDFLKEALR ALVERPGAAG DRPKRRRVSG MNMQAAA

Best Arabidopsis Sequence Match ( AT2G41130.1 )
(BLAST)

001: MQPETSDQML YSFLAGNEVG GGGYCVSGDY MTTMQSLCGS SSSTSSYYPL AISGIGETMA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV

Arabidopsis Description

BHLH106Transcription factor bHLH106 [Source:UniProtKB/Swiss-Prot;Acc:O80674]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.