Factsheet for Solyc10g078380.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021599	Potato	nucleus	95.4	95.04
VIT_08s0040g01240.t01	Wine grape	nucleus	47.13	51.46
KRG95083	Soybean	nucleus	47.89	49.8
CDY23874	Canola	nucleus	45.21	49.79
KRH54953	Soybean	nucleus	47.89	49.41
KRH66750	Soybean	plastid	46.74	49.0
CDY22504	Canola	nucleus	44.83	48.15
CDX79957	Canola	nucleus	45.21	47.2
Bra004599.1-P	Field mustard	nucleus	44.83	46.8
AT2G41130.1	Thale cress	nucleus	44.83	46.25
AT3G56770.1	Thale cress	nucleus	40.61	46.09
CDY06944	Canola	nucleus	44.44	45.67
Bra016951.1-P	Field mustard	nucleus	44.44	45.67
CDY57584	Canola	nucleus	44.06	45.28
GSMUA_Achr8P23980_001	Banana	nucleus	38.7	44.49
Bra014672.1-P	Field mustard	nucleus	37.55	42.24
CDX76011	Canola	nucleus	37.55	42.24
Solyc04g006990.2.1	Tomato	nucleus	33.72	41.71
TraesCS5D01G479100.1	Wheat	nucleus	38.7	40.24
TraesCS5B01G478000.1	Wheat	nucleus	38.31	39.84
Zm00001d034596_P001	Maize	nucleus	34.87	39.74
TraesCS5A01G466300.1	Wheat	plastid	37.93	39.6
Os03t0811400-00	Rice	nucleus	38.7	37.69
EER93220	Sorghum	nucleus	37.93	37.08
Solyc03g095980.2.1	Tomato	nucleus	26.05	32.54
GSMUA_Achr7P21370_001	Banana	nucleus	36.4	32.31
Solyc05g009880.2.1	Tomato	nucleus	35.25	30.67
Solyc04g076240.1.1	Tomato	nucleus	22.22	28.29
Solyc02g076920.2.1	Tomato	cytosol, nucleus, plastid	25.67	27.92
Solyc07g053290.2.1	Tomato	nucleus	27.2	27.84
Solyc04g014360.2.1	Tomato	nucleus	27.97	26.94
Solyc06g051260.2.1	Tomato	nucleus	21.07	24.44

Protein Annotations

EnsemblPlants:Solyc10g078380.1.1	EnsemblPlantsGene:Solyc10g078380.1	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF158	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000276A242	UniProt:K4D280	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr10:+:60202280..60204245

Molecular Weight (calculated)

29875.1 Da

IEP (calculated)

6.937

GRAVY (calculated)

-0.761

Length

261 amino acids

Sequence
(BLAST)

001: MQQQQEDFQE NLESCNYFSK NKSSSSDNNM MGEYYGFDIE AIKNFCSSSP FYPQHNHVEF QETIESNNNS PESRAKNHKE AERRRRERIN SHLHSLRTLL
101: SCNSKLDKAS LLAKVVQRVR ELKEQTSQIM QSETNLLFPS ETDEITVLSS NDCLADGRLL IKASLCCEDR FDLIPDLIET LKSLGLSPIR AEMVTLGGRI
201: HNVIVLAVDH KKESNNNNTD HDESSLLFLR DALRSIVQRS SYGTGERGKR RRVLGQGTRN Y

Best Arabidopsis Sequence Match ( AT2G41130.1 )
(BLAST)

001: MQPETSDQML YSFLAGNEVG GGGYCVSGDY MTTMQSLCGS SSSTSSYYPL AISGIGETMA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV

Arabidopsis Description

BHLH106Transcription factor bHLH106 [Source:UniProtKB/Swiss-Prot;Acc:O80674]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.