Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034596_P001 | Maize | nucleus | 71.27 | 83.41 |
| TraesCS5A01G466300.1 | Wheat | plastid | 76.49 | 82.0 |
| TraesCS5D01G479100.1 | Wheat | nucleus | 76.12 | 81.27 |
| TraesCS5B01G478000.1 | Wheat | nucleus | 76.12 | 81.27 |
| EER93220 | Sorghum | nucleus | 77.99 | 78.28 |
| GSMUA_Achr8P23980_001 | Banana | nucleus | 49.63 | 58.59 |
| KRH54953 | Soybean | nucleus | 42.91 | 45.45 |
| CDY23874 | Canola | nucleus | 39.55 | 44.73 |
| GSMUA_Achr7P21370_001 | Banana | nucleus | 48.88 | 44.56 |
| VIT_08s0040g01240.t01 | Wine grape | nucleus | 38.43 | 43.1 |
| KRH66750 | Soybean | plastid | 39.93 | 42.97 |
| CDY22504 | Canola | nucleus | 38.81 | 42.8 |
| KRG95083 | Soybean | nucleus | 39.93 | 42.63 |
| CDX79957 | Canola | nucleus | 39.55 | 42.4 |
| Bra004599.1-P | Field mustard | nucleus | 39.18 | 42.0 |
| AT2G41130.1 | Thale cress | nucleus | 39.55 | 41.9 |
| CDY57584 | Canola | nucleus | 38.81 | 40.94 |
| CDY06944 | Canola | nucleus | 38.81 | 40.94 |
| Bra016951.1-P | Field mustard | nucleus | 38.81 | 40.94 |
| Solyc10g078380.1.1 | Tomato | nucleus | 37.69 | 38.7 |
| AT3G56770.1 | Thale cress | nucleus | 32.84 | 38.26 |
| PGSC0003DMT400021599 | Potato | nucleus | 37.31 | 38.17 |
| Bra014672.1-P | Field mustard | nucleus | 32.46 | 37.5 |
| CDX76011 | Canola | nucleus | 32.46 | 37.5 |
| Os08t0477900-00 | Rice | nucleus | 25.0 | 30.04 |
| Os08t0432800-01 | Rice | nucleus | 35.45 | 27.54 |
| Os01t0218100-01 | Rice | nucleus | 26.87 | 26.97 |
| Os05t0163900-01 | Rice | nucleus | 26.87 | 26.57 |
| Os09t0410700-00 | Rice | nucleus | 33.96 | 25.07 |
| Os03t0260600-01 | Rice | nucleus | 37.31 | 24.45 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:4334540 | ProteinID:AAP73859.1 | ProteinID:ABF99493.1 | ProteinID:BAS87004.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os03g0811400 | EnsemblPlants:Os03t0811400-00 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF158 | UniProt:Q7XZF8 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00001AA3DA |
| RefSeq:XP_015629146.1 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
basic helix-loop-helix protein 041Similar to DNA binding protein. (Os03t0811400-00)
Coordinates
chr3:+:33973760..33975525
Molecular Weight (calculated)
27914.4 Da
IEP (calculated)
6.160
GRAVY (calculated)
-0.084
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPVEVAAAA AAAGRMQGEA VVPMMLPPFF MDSGIWPAAA GVVDVAASAE EEAAAAAAAA QDRALAASRN HREAEKRRRE RIKSHLDRLR AVLACDPKID
101: KASLLAKAVE RVRDLKQRMA GIGEAAPAHL FPTEHDEIVV LASGGGGVGG AGGAAAVFEA SVCCDDRCDL LPELIETLRA LRLRTLRAEM ATLGGRVRNV
201: LVLARDAGGA GEGGDGDDDR AGYSAVSNDG GDFLKEALRA LVERPGAAAG DRPKRRRVVS DMNMQAAA
101: KASLLAKAVE RVRDLKQRMA GIGEAAPAHL FPTEHDEIVV LASGGGGVGG AGGAAAVFEA SVCCDDRCDL LPELIETLRA LRLRTLRAEM ATLGGRVRNV
201: LVLARDAGGA GEGGDGDDDR AGYSAVSNDG GDFLKEALRA LVERPGAAAG DRPKRRRVVS DMNMQAAA
001: MQPETSDQML YSFLAGNEVG GGGYCVSGDY MTTMQSLCGS SSSTSSYYPL AISGIGETMA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV
Arabidopsis Description
BHLH106Transcription factor bHLH106 [Source:UniProtKB/Swiss-Prot;Acc:O80674]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.