Factsheet for Os08t0477900-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G472300.1	Wheat	nucleus	74.89	79.52
TraesCS2B01G494900.1	Wheat	nucleus	73.09	77.25
TraesCS2D01G472000.1	Wheat	nucleus	71.75	73.73
EES14023	Sorghum	nucleus	66.82	61.07
Zm00001d031818_P001	Maize	nucleus	65.02	60.67
GSMUA_Achr3P06780_001	Banana	cytosol	48.88	53.17
GSMUA_Achr9P15140_001	Banana	plastid	52.47	50.87
VIT_18s0001g07410.t01	Wine grape	nucleus	39.46	39.82
KRH16843	Soybean	cytosol	37.22	34.58
CDX90384	Canola	cytosol	25.11	34.36
KRH72457	Soybean	nucleus	38.12	33.46
PGSC0003DMT400060615	Potato	cytosol	31.84	31.7
PGSC0003DMT400024185	Potato	nucleus	28.25	30.88
Solyc04g076240.1.1	Tomato	nucleus	28.25	30.73
Os01t0218100-01	Rice	nucleus	35.43	29.59
Os05t0163900-01	Rice	nucleus	32.29	26.57
KRH69661	Soybean	mitochondrion	25.11	26.42
Solyc04g014360.2.1	Tomato	nucleus	31.84	26.2
Bra010635.1-P	Field mustard	plastid	26.01	25.89
Os03t0811400-00	Rice	nucleus	30.04	25.0
AT4G38070.1	Thale cress	plastid	26.46	23.05
Os09t0410700-00	Rice	nucleus	36.32	22.31
Os08t0432800-01	Rice	nucleus	34.08	22.03
Os03t0260600-01	Rice	nucleus	34.98	19.07
CDY52514	Canola	cytosol	26.01	4.03

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:4345836	ProteinID:BAD09003.1	ProteinID:BAF23961.1	ProteinID:BAT05896.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os08g0477900
EnsemblPlants:Os08t0477900-00	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF120	UniProt:Q6ZJC8
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000023ACB1	RefSeq:XP_015649548.1	InterPro:bHLH_dom	SEG:seg

Description

basic helix-loop-helix protein 042Helix-loop-helix DNA-binding domain containing protein. (Os08t0477900-00)

Coordinates

chr8:+:23572583..23573388

Molecular Weight (calculated)

23974.3 Da

IEP (calculated)

7.800

GRAVY (calculated)

-0.376

Length

223 amino acids

Sequence
(BLAST)

001: MVTDGECSAA AVRKGGSPAV RSHSEAERKR RQRINAHLAT LRTLVPSASR MDKAALLGEV VRHVRELRCR ADDATEGADV VVPGEGDEVG VEDEDDDEGE
101: RDEGCYVVGG GDRRWRRRVR AWVCCADRPG LMSDLGRAVR SVSARPVRAE VATVGGRTRS VLELDVVVAS DAADNDRAVA LSALRAALRT VLLNREELLA
201: AAAAAATDGY KRPRFSPRCS SLT

Best Arabidopsis Sequence Match ( AT3G25710.1 )
(BLAST)

001: MYAMKEEDCL QTFHNLQDYQ DQFHLHHHPQ ILPWSSTSLP SFDPLHFPSN PTRYSDPVHY FNRRASSSSS SFDYNDGFVS PPPSMDHPQN HLRILSEALG
101: PIMRRGSSFG FDGEIMGKLS AQEVMDAKAL AASKSHSEAE RRRRERINTH LAKLRSILPN TTKTDKASLL AEVIQHMKEL KRQTSQITDT YQVPTECDDL
201: TVDSSYNDEE GNLVIRASFC CQDRTDLMHD VINALKSLRL RTLKAEIATV GGRVKNILFL SREYDDEEDH DSYRRNFDGD DVEDYDEERM MNNRVSSIEE
301: ALKAVIEKCV HNNDESNDNN NLEKSSSGGI KRQRTSKMVN RCYN

Arabidopsis Description

BHLH32Transcription factor AIG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS08]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.