Factsheet for Solyc04g014360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060615	Potato	cytosol	75.65	91.52
CDX90384	Canola	cytosol	23.99	39.88
Solyc04g006990.2.1	Tomato	nucleus	29.89	38.39
TraesCS5A01G245600.1	Wheat	nucleus	26.57	37.31
GSMUA_Achr3P06780_001	Banana	cytosol	26.94	35.61
TraesCS5B01G243000.1	Wheat	nucleus	26.94	34.93
HORVU5Hr1G069580.1	Barley	nucleus	26.94	34.76
TraesCS5D01G252300.1	Wheat	nucleus	26.57	34.45
KRH69661	Soybean	mitochondrion	26.94	34.43
GSMUA_Achr9P15140_001	Banana	plastid	28.78	33.91
TraesCS2B01G494900.1	Wheat	nucleus	26.2	33.65
TraesCS2A01G472300.1	Wheat	nucleus	25.83	33.33
Bra010635.1-P	Field mustard	plastid	27.31	33.04
Zm00001d005919_P001	Maize	nucleus	25.83	32.71
TraesCS2D01G472000.1	Wheat	nucleus	25.83	32.26
Os08t0477900-00	Rice	nucleus	26.2	31.84
EER96881	Sorghum	cytosol, nucleus, peroxisome, plastid	26.2	31.56
Solyc04g076240.1.1	Tomato	nucleus	23.62	31.22
Solyc03g095980.2.1	Tomato	nucleus	23.99	31.1
Zm00001d020763_P001	Maize	nucleus	25.83	30.7
Zm00001d031818_P001	Maize	nucleus	26.2	29.71
Solyc07g053290.2.1	Tomato	nucleus	27.68	29.41
EES14023	Sorghum	nucleus	26.2	29.1
Solyc02g076920.2.1	Tomato	cytosol, nucleus, plastid	25.46	28.75
AT4G38070.1	Thale cress	plastid	26.57	28.12
Solyc10g078380.1.1	Tomato	nucleus	26.94	27.97
Solyc05g009880.2.1	Tomato	nucleus	30.63	27.67
Solyc06g051260.2.1	Tomato	nucleus	22.14	26.67
CDY52514	Canola	cytosol	27.68	5.21

Protein Annotations

EnsemblPlants:Solyc04g014360.2.1	EnsemblPlantsGene:Solyc04g014360.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF201	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI00027665F9	UniProt:K4BPU0	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr4:-:4614412..4616761

Molecular Weight (calculated)

30448.1 Da

IEP (calculated)

6.152

GRAVY (calculated)

-0.580

Length

271 amino acids

Sequence
(BLAST)

001: MYQFPSFYEL GNTCSDSYNN FLHEIITSSS SEMFNNINNL ESSSVSPRSM AEAKAIAANK SHSEAERRRR KRINGHLATL RNLLPNTIKT DKASLLAEAV
101: RCVRELKQTT SELGATTTTT TMSENDDDDD HTTLMTKIMF PSESDELNLS YCNESNNNNT DNNNDDRNLI IKASMCCEDR PEIMMELRRA LSTVEGKIVR
201: AEMSTVGGRI KCILWLEMLE NGCKEGLFVQ LRRALKVVMD KANFGPQNMG QDLLGNNKRP RLLGGPINYA T

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.